genome.fa.s4622.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004622.1 Hibiscus syriacus cultivar Beakdansim tig00010344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131793

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1202--1297	49	1.9	50	87	2	140	42	14	19	22	1.88
2565--2636	36	2.0	37	83	5	94	20	6	13	58	1.59
6235--6727	182	2.7	181	86	2	673	41	13	16	27	1.86
9112--9155	21	2.1	21	95	0	79	40	11	34	13	1.81
9189--9254	33	2.0	33	93	0	114	27	3	45	24	1.68
11025--11073	19	2.6	19	96	0	89	32	2	10	55	1.45
11384--11422	15	2.6	15	87	0	60	38	23	12	25	1.90
11439--12587	200	5.8	200	83	4	1344	37	14	16	31	1.89
15337--15389	24	2.2	24	82	0	61	33	3	15	47	1.63
16607--17574	200	4.8	199	85	2	1224	37	13	16	31	1.88
21608--22323	199	3.6	199	84	4	883	39	14	15	30	1.87
22324--22486	87	1.9	87	92	0	272	33	14	11	41	1.81
23907--23934	14	2.0	14	100	0	56	35	0	0	64	0.94
29907--29954	25	2.0	24	88	8	71	39	4	4	52	1.40
30339--30400	20	2.9	21	80	7	72	16	24	35	24	1.95
36889--36968	20	3.8	21	78	18	85	21	20	35	23	1.96
38091--38134	23	1.9	23	95	0	79	15	25	27	31	1.96
38247--38311	24	2.8	23	90	4	103	21	24	24	29	1.99
38805--38848	21	2.1	21	86	0	61	29	18	22	29	1.97
42133--42180	20	2.4	19	76	10	51	52	8	18	20	1.71
41921--42395	182	2.6	183	89	1	704	43	13	16	25	1.85
42316--42363	20	2.5	20	77	16	64	54	10	16	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44228--45069	182	4.6	182	94	0	1463	42	12	16	27	1.85
45955--46006	11	4.7	11	76	9	61	57	21	1	19	1.50
46107--46248	36	3.9	36	93	0	248	18	23	23	33	1.96
48231--48281	27	1.9	26	84	11	68	31	0	21	47	1.51
51496--51523	6	4.7	6	100	0	56	67	0	0	32	0.91
59057--59088	15	2.1	16	94	5	57	46	12	6	34	1.67
66687--66735	20	2.5	20	89	0	71	24	6	10	59	1.53
70290--70332	22	2.0	22	85	0	59	37	13	25	23	1.92
70866--70926	22	2.9	21	87	4	86	26	24	24	24	2.00
77231--77279	22	2.2	22	85	7	64	44	12	22	20	1.84
88953--88998	21	2.2	21	88	0	65	47	8	39	4	1.54
88961--89000	21	1.9	21	94	0	71	50	5	37	7	1.53
89581--89668	27	3.3	27	91	0	149	12	25	18	44	1.84
94866--94890	4	6.2	4	100	0	50	24	0	0	76	0.80
95576--95623	15	3.3	15	71	11	55	56	2	6	35	1.36
102707--102761	24	2.3	22	82	17	58	67	5	25	1	1.22
109160--109212	22	2.5	22	84	3	72	32	18	18	30	1.96
109731--109756	7	3.7	7	100	0	52	15	0	38	46	1.46
112002--112075	21	3.6	20	83	5	78	32	22	21	22	1.98
114722--114795	21	3.6	20	83	5	78	32	22	21	22	1.98
116886--116941	24	2.3	24	96	0	103	48	16	7	28	1.72
127140--127164	13	1.9	13	100	0	50	80	0	8	12	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128878--128908	15	2.1	15	93	0	53	22	19	19	38	1.93

Tables:   1

The End!