genome.fa.s4623.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004623.1 Hibiscus syriacus cultivar Beakdansim tig00010345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  173203

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11108--11148	13	3.2	13	96	3	75	73	4	21	0	1.02
15264--15394	69	1.9	70	84	6	176	45	8	13	32	1.74
15558--15831	77	3.6	75	79	7	293	35	17	10	35	1.85
20869--21012	33	4.0	37	75	21	103	36	22	13	27	1.92
25685--25747	33	1.9	33	93	0	108	38	23	12	25	1.90
34512--34547	14	2.6	14	95	0	63	0	36	0	63	0.94
38223--38759	180	3.0	179	88	1	738	32	19	15	33	1.93
45102--45203	34	2.9	36	89	5	163	44	13	13	28	1.82
45099--45237	37	3.8	37	83	5	158	41	13	12	31	1.83
45595--45637	18	2.5	17	85	7	61	25	4	2	67	1.22
46187--46231	22	2.0	22	87	8	65	20	4	0	75	0.97
46197--46226	13	2.3	13	94	0	51	23	3	0	73	0.98
49260--49315	13	4.5	13	75	22	57	82	7	10	0	0.85
49254--49321	7	9.6	7	74	13	52	82	5	11	0	0.83
49254--49315	25	2.5	24	84	7	81	82	6	11	0	0.84
49254--49321	16	4.2	16	75	23	63	82	5	11	0	0.83
49288--49330	14	3.0	14	79	3	50	79	4	16	0	0.90
49917--49960	22	2.0	22	91	8	72	38	22	11	27	1.88
50396--50430	17	2.0	18	94	5	63	17	8	34	40	1.80
50994--51151	36	4.3	36	91	2	262	25	20	13	41	1.88
50911--51293	174	2.2	173	84	3	511	27	20	13	38	1.90
51075--51257	102	1.8	101	86	1	267	27	18	14	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51038--51354	138	2.3	137	86	1	436	28	19	13	39	1.89
51170--51293	36	3.4	36	84	3	169	25	20	14	38	1.91
51242--51425	65	2.8	65	82	7	217	32	20	9	37	1.85
52029--52689	105	6.3	105	89	3	929	33	25	18	22	1.96
53237--53338	34	2.9	36	89	5	163	44	13	13	28	1.82
53234--53372	37	3.8	37	83	5	158	41	13	12	31	1.83
53645--53687	18	2.5	17	85	7	61	25	4	2	67	1.22
53733--53759	2	13.5	2	100	0	54	48	0	0	51	1.00
53929--53965	2	18.5	2	100	0	74	48	0	0	51	1.00
54131--54210	40	2.0	40	86	9	112	31	5	8	55	1.52
54270--54303	9	3.8	9	92	7	52	20	2	0	76	0.92
54270--54304	13	2.6	14	90	4	54	20	2	0	77	0.90
61773--61813	8	5.2	8	82	5	57	34	0	29	36	1.58
61884--62993	128	8.9	128	93	4	1904	23	24	19	33	1.97
62563--62993	119	3.6	119	88	7	633	24	23	17	34	1.96
61884--62993	503	2.2	501	93	5	1900	23	24	19	33	1.97
63095--63137	22	1.9	22	85	4	59	44	0	20	34	1.52
63394--63494	34	3.0	34	80	0	121	40	2	2	53	1.31
63718--63749	15	2.1	15	94	0	55	21	37	0	40	1.54
64013--64103	21	4.3	20	84	6	101	20	25	34	19	1.97
64010--64103	42	2.2	42	81	3	118	22	25	32	19	1.97
64107--64154	21	2.3	21	85	0	60	22	12	39	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65890--65974	32	2.6	32	81	5	98	60	2	0	37	1.10
65885--65965	35	2.4	34	81	8	103	61	1	0	37	1.04
65918--65997	34	2.3	34	81	12	92	65	5	0	30	1.14
67121--67193	6	12.2	6	97	0	128	30	50	0	19	1.48
78724--78777	18	3.0	19	72	20	53	59	0	0	40	0.98
79255--79303	24	2.0	24	100	0	98	16	12	14	57	1.66
79278--79332	18	2.9	19	78	15	60	10	18	12	58	1.63
81697--81737	21	2.0	21	85	9	57	51	0	4	43	1.23
81740--81798	28	2.2	27	82	11	68	44	3	15	37	1.63
87319--88954	817	2.0	815	96	2	3007	28	8	20	42	1.82
93806--93830	2	12.5	2	100	0	50	52	0	0	48	1.00
96135--96184	26	1.9	26	87	0	73	26	18	28	28	1.98
101952--104420	823	3.0	823	98	0	4737	28	8	20	42	1.81
106367--106557	83	2.3	83	80	5	206	23	19	20	36	1.95
106789--106995	110	1.9	110	88	0	315	22	17	23	36	1.94
107666--107831	65	2.5	65	86	2	215	38	8	21	31	1.83
107584--107831	65	3.7	67	77	8	211	39	9	20	30	1.85
107780--108089	36	9.0	36	70	15	217	38	11	20	28	1.88
107792--107878	37	2.4	36	88	1	120	41	16	19	22	1.90
107817--108089	101	2.7	99	83	2	305	39	12	20	28	1.88
109746--109798	13	4.0	13	81	11	63	3	16	1	77	1.01
113004--113050	17	2.7	17	78	12	51	72	0	10	17	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113158--113236	35	2.5	31	78	13	79	73	1	2	22	1.03
113226--113301	16	4.8	16	67	22	52	59	1	3	35	1.24
113203--113312	47	2.4	46	84	6	143	60	2	3	32	1.28
113332--113372	2	21.0	2	80	14	50	51	2	2	43	1.28
113341--113391	17	2.9	17	88	5	66	58	0	1	39	1.09
113337--113395	14	4.1	14	81	16	59	59	0	1	38	1.08
113337--113399	22	2.9	22	86	6	76	61	0	1	36	1.05
113347--113397	17	2.9	17	88	5	66	62	0	1	35	1.06
114867--114974	46	2.3	46	80	0	135	25	23	10	40	1.86
114972--115168	81	2.4	81	86	1	279	30	22	10	36	1.88
115146--115206	27	2.3	27	91	5	97	24	26	8	40	1.83
115065--115269	108	1.9	108	90	0	329	30	22	9	36	1.87
115173--115635	81	5.7	81	88	0	676	31	20	12	35	1.90
114984--115350	189	1.9	189	88	0	554	30	21	10	37	1.87
122193--122262	30	2.3	30	80	7	79	22	21	22	32	1.98
124709--124767	21	2.8	21	89	0	91	20	42	28	8	1.81
137727--137822	42	2.3	42	87	0	129	29	17	19	33	1.95
137861--137885	13	1.9	13	100	0	50	32	24	20	24	1.98
137875--138058	42	4.4	42	85	2	228	27	19	19	34	1.95
137873--137978	20	5.1	20	63	8	59	26	20	20	32	1.98
137881--137989	22	5.1	22	67	12	93	28	17	20	33	1.95
138480--138581	53	1.9	53	89	0	159	31	21	26	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149466--149649	65	2.8	65	82	7	214	29	23	19	27	1.98
149597--149645	19	2.6	19	84	9	57	24	28	20	26	1.99
155430--155510	24	3.6	23	69	17	71	23	23	23	29	1.99
158162--158347	67	2.9	64	78	10	200	30	24	18	26	1.98
163760--163810	26	2.0	26	92	0	84	21	17	19	41	1.91
164717--164762	18	2.4	19	79	20	51	36	0	15	47	1.45
167232--167267	10	3.6	10	84	0	54	0	0	11	88	0.50
169059--169112	25	2.1	26	93	3	92	50	11	7	31	1.66

Tables:   1

The End!