Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004624.1 Hibiscus syriacus cultivar Beakdansim tig00010347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63501

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2647--2690
21
2.2
20
84
12
54
22
13
11
52
1.72
13386--13461
35
2.2
35
95
0
134
39
7
21
31
1.82
13832--13871
18
2.3
18
83
8
57
25
5
2
67
1.23
14347--14422
38
2.1
38
85
9
104
30
5
7
56
1.50
14413--14451
2
19.5
2
94
0
60
43
5
0
51
1.24
14511--14535
9
2.8
9
100
0
50
20
0
0
80
0.72
23128--23971
106
8.0
106
86
4
1086
33
22
19
24
1.97
23128--23940
411
2.0
414
88
1
1202
33
22
19
24
1.97
24450--24521
35
2.1
35
100
0
144
40
11
20
27
1.87
24993--25023
2
15.5
2
100
0
62
48
0
0
51
1.00
25340--25416
41
1.9
39
84
10
102
15
25
7
50
1.71
25432--25510
40
2.0
40
83
9
101
30
5
6
58
1.45
25570--25600
15
2.1
15
94
5
55
19
0
0
80
0.71
27221--27291
24
3.0
23
93
2
115
8
11
25
54
1.63
27232--27285
14
4.2
14
75
20
64
7
11
25
55
1.61
28363--28421
10
6.6
10
67
25
51
10
10
22
57
1.61
28372--28418
16
2.8
17
90
3
69
8
10
23
57
1.60
28687--28711
13
1.9
13
100
0
50
64
4
0
32
1.12
29285--29315
6
5.2
6
100
0
62
64
0
0
35
0.94
34358--34405
17
2.7
18
79
17
55
45
0
2
52
1.12
34358--34400
17
2.4
19
85
14
56
48
0
0
51
1.00
36678--36754
20
3.8
20
96
0
136
35
22
20
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36783--36871
20
4.5
19
76
15
83
29
19
13
38
1.89
36759--36878
40
3.0
40
77
12
129
31
20
12
35
1.90
36826--36963
69
2.0
69
94
0
240
28
18
15
37
1.91
37065--37118
22
2.5
22
96
3
101
25
38
7
27
1.83
37917--37962
24
1.9
24
100
0
92
21
19
23
34
1.96
37916--37969
24
2.2
24
90
0
90
20
16
22
40
1.91
40585--40733
64
2.3
64
94
0
253
51
17
2
28
1.56
42074--42191
21
5.6
21
76
6
105
22
19
34
22
1.96
42074--42196
42
2.9
41
85
4
165
23
19
34
21
1.96
42489--42584
21
4.6
21
66
12
54
31
33
13
21
1.92
42807--42847
18
2.2
18
86
8
55
17
12
46
24
1.82
44195--44239
20
2.2
20
96
0
81
53
15
17
13
1.73
44241--44300
20
3.0
20
77
0
66
15
15
21
48
1.81
44632--44674
22
2.0
22
95
0
77
20
16
41
20
1.90
44639--44684
22
2.1
22
91
0
74
19
15
45
19
1.85
46205--46271
34
2.0
34
96
0
125
16
22
7
53
1.67
48863--48933
34
2.1
34
94
0
124
25
11
12
50
1.73
53252--53442
82
2.3
82
85
4
240
32
18
10
38
1.85
55521--55612
47
2.0
47
93
0
157
23
17
17
41
1.90
57201--57240
14
2.9
14
85
10
55
37
5
0
57
1.21

Tables:   1

The End!