genome.fa.s4625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004625.1 Hibiscus syriacus cultivar Beakdansim tig00010350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64976

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
910--1620	199	3.6	200	82	4	793	32	19	21	26	1.97
1983--2199	37	5.8	37	79	13	239	42	4	8	44	1.55
1983--2194	38	5.7	36	81	11	225	43	4	8	43	1.54
2195--2268	38	2.0	38	86	5	107	45	5	5	43	1.49
2393--2430	5	8.2	5	94	5	55	34	0	0	65	0.93
2388--2435	8	5.4	9	80	11	55	31	0	0	68	0.90
2392--2435	13	3.2	14	81	15	56	31	0	0	68	0.90
4571--4711	60	2.3	62	80	9	148	30	25	4	39	1.75
8273--8331	19	3.0	20	80	7	66	25	20	20	33	1.97
8266--8331	21	3.2	21	78	8	73	25	21	19	33	1.97
8247--8400	21	7.6	20	72	8	62	31	20	19	27	1.97
8325--8399	20	3.7	20	77	10	89	41	20	18	20	1.91
8326--8411	41	2.1	41	100	0	172	41	19	16	22	1.90
8598--8674	22	3.5	22	89	0	109	23	42	14	19	1.87
8922--9010	20	4.4	20	88	0	106	23	28	21	26	1.99
9827--9880	24	2.2	24	86	0	72	22	18	16	42	1.89
12133--12167	18	1.9	18	94	0	61	54	25	2	17	1.57
12225--12507	140	2.0	140	95	0	512	28	12	14	43	1.83
12478--12534	20	2.8	20	94	0	96	31	21	21	26	1.98
12573--12647	20	3.9	20	82	5	84	13	17	25	44	1.85
14190--14299	42	2.6	42	77	5	107	25	17	35	21	1.95
14768--14812	21	2.2	21	88	4	65	51	20	13	15	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14799--14847	20	2.5	20	100	0	98	38	26	20	14	1.91
14775--14909	20	7.1	19	73	12	64	47	22	16	14	1.82
14910--14962	20	2.7	20	91	2	81	13	18	18	49	1.80
14967--15015	20	2.5	20	93	0	80	16	20	26	36	1.93
15002--15047	20	2.2	20	84	7	56	15	13	19	52	1.75
16924--16979	20	2.8	20	86	0	67	50	19	16	14	1.79
17358--17394	19	1.9	19	88	0	56	35	29	13	21	1.92
17534--17570	19	1.9	19	88	0	56	21	13	29	35	1.92
19053--19112	27	2.2	27	90	0	93	35	13	8	43	1.74
23697--23759	21	3.3	21	62	25	57	34	12	6	46	1.68
23696--23767	36	2.0	36	100	0	144	33	11	8	47	1.69
36491--36539	19	2.6	19	84	9	57	24	28	20	26	1.99
42317--42397	24	3.5	24	70	20	75	23	24	22	29	1.99
45026--45235	65	3.3	63	77	9	210	30	24	18	26	1.98
45207--45255	19	2.6	19	84	9	57	24	28	20	26	1.99
47852--47891	3	13.3	3	100	0	80	65	0	0	35	0.93
48427--48943	37	14.6	37	72	12	361	38	15	17	28	1.90
48359--48943	140	4.2	140	91	0	927	38	14	17	29	1.90
48604--48803	103	1.9	104	81	1	240	38	15	18	28	1.91
48744--48951	103	2.0	104	87	0	301	37	15	18	29	1.91
49082--49200	37	3.2	36	75	9	116	40	10	15	34	1.80
53574--53599	13	2.0	13	100	0	52	38	15	30	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56744--56816	3	24.3	3	100	0	146	65	0	0	34	0.93
61839--61883	22	2.0	22	100	0	90	42	4	0	53	1.21
62800--62835	17	2.1	17	89	0	54	13	30	0	55	1.39
63807--63987	65	2.8	64	77	9	199	28	16	24	30	1.97
63827--64034	65	3.2	63	73	12	172	26	15	25	32	1.96

Tables:   1

The End!