genome.fa.s4626.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004626.1 Hibiscus syriacus cultivar Beakdansim tig00010351_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142111

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2766--2852	43	2.0	44	87	12	128	33	11	5	49	1.63
10824--10854	16	1.9	16	93	0	53	54	6	6	32	1.51
20630--20677	23	2.1	23	100	0	96	22	12	25	39	1.89
30883--30912	16	1.9	16	93	6	53	23	10	6	60	1.52
35789--35823	18	1.9	18	94	0	61	14	20	17	48	1.81
37584--37608	13	1.9	13	100	0	50	40	4	8	48	1.51
37592--37630	20	2.0	20	89	0	60	33	5	7	53	1.51
45094--45136	18	2.4	18	88	0	59	23	9	0	67	1.19
57153--57200	24	2.0	24	91	0	78	31	22	25	20	1.98
57155--57206	24	2.2	24	85	0	68	34	19	23	23	1.96
57211--57276	23	2.9	23	83	0	96	31	27	24	16	1.96
62163--62215	23	2.3	23	83	6	63	47	0	3	49	1.19
71918--71998	17	4.8	17	73	11	76	43	9	9	37	1.71
71916--72019	34	3.0	34	87	1	145	40	11	11	36	1.78
85755--85861	34	3.1	34	82	1	124	40	11	6	42	1.67
85755--85861	17	6.2	17	71	14	76	40	11	6	42	1.67
91948--91988	20	2.1	19	95	4	73	29	17	31	21	1.96
91952--92001	20	2.5	20	87	6	66	32	20	24	24	1.98
95404--95496	28	3.0	32	77	12	88	33	13	7	45	1.72
100484--100544	30	2.0	30	81	6	70	42	1	1	54	1.20
100571--100614	21	2.1	21	83	8	54	47	0	0	52	1.00
100629--100704	27	2.8	26	80	13	82	48	1	1	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100909--100956	24	1.9	26	83	8	64	45	0	0	54	0.99
100932--100988	17	3.2	17	75	15	62	45	0	1	52	1.11
104348--104378	14	2.2	14	94	0	53	35	0	6	58	1.24
108392--108458	24	2.7	24	80	17	66	47	1	1	49	1.19
108416--108464	24	2.1	22	82	14	55	57	2	0	40	1.10
110657--110682	2	13.0	2	100	0	52	50	0	0	50	1.00
114487--114550	2	33.5	2	73	20	57	50	1	3	45	1.27
114487--114699	11	18.7	11	68	18	53	46	3	4	45	1.40
114533--114583	11	4.4	12	81	13	54	41	1	5	50	1.37
114655--114699	23	1.9	24	90	4	74	53	11	0	35	1.37
114856--114890	15	2.3	15	95	0	61	8	68	17	5	1.35
115727--115760	15	2.3	15	100	0	68	47	5	5	41	1.52
115779--115878	32	3.1	33	84	7	109	45	6	6	43	1.53
115831--115953	20	6.0	20	69	20	69	45	7	2	44	1.44
115928--115998	11	6.4	11	69	9	54	49	7	4	39	1.49
115843--116074	74	3.3	71	69	20	162	43	6	4	45	1.50
115914--116018	34	2.9	34	79	11	95	47	5	3	42	1.45
115988--116074	27	3.4	26	78	10	74	42	5	5	45	1.51
118072--118098	6	4.5	6	100	0	54	18	48	0	33	1.49
123102--123375	82	3.3	82	73	9	225	33	16	19	31	1.94
123129--123371	85	3.0	80	76	6	225	34	16	18	31	1.93
123632--123676	12	3.8	12	84	0	63	42	20	17	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123632--123677	24	1.9	24	95	0	83	41	19	19	19	1.91
127397--127485	45	1.9	47	88	4	137	30	11	21	37	1.88
137083--137245	8	20.1	8	74	17	72	69	1	18	11	1.24
137089--137150	9	7.1	9	82	12	67	77	0	14	8	0.98
137097--137150	25	2.1	25	93	3	90	77	0	14	7	0.97
138595--138980	55	7.2	55	82	8	280	27	16	25	30	1.97
138836--138999	55	3.0	55	84	2	170	29	18	23	28	1.98

Tables:   1

The End!