Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004627.1 Hibiscus syriacus cultivar Beakdansim tig00010353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85649

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9510--9635
23
5.4
23
78
8
105
30
23
27
17
1.97
9528--9635
46
2.3
46
82
3
119
31
23
28
16
1.96
10348--10417
15
4.7
15
96
0
122
14
22
27
35
1.93
13641--13826
93
2.0
91
84
6
241
28
17
22
31
1.96
13771--13817
25
1.9
24
86
4
67
31
21
25
21
1.98
15295--15328
16
2.1
16
94
0
59
29
14
8
47
1.75
15554--15590
19
1.9
19
88
0
56
40
10
2
45
1.53
16368--16483
57
2.0
57
91
0
187
46
9
16
27
1.78
18833--18975
64
2.3
63
80
8
166
60
11
7
20
1.55
19389--19475
2
44.0
2
80
11
99
49
2
1
47
1.21
24906--24948
19
2.3
19
84
11
61
16
4
4
74
1.16
27539--27615
2
38.5
2
97
0
145
49
1
0
49
1.09
33046--33099
24
2.4
21
77
17
56
42
3
1
51
1.30
33091--33124
16
2.2
15
89
5
50
70
0
0
29
0.87
34534--34581
20
2.5
20
93
3
80
64
4
10
20
1.41
34896--34972
16
4.8
16
93
0
127
54
22
12
10
1.68
37733--38013
139
2.0
139
100
0
562
35
9
12
41
1.77
38556--38598
22
2.0
22
95
0
77
39
16
25
18
1.91
44677--44746
31
2.2
31
85
7
88
45
5
0
48
1.26
45099--45158
27
2.3
27
94
2
104
35
16
6
41
1.75
46857--46926
36
1.9
36
85
0
95
28
1
27
42
1.64
49078--49445
138
2.7
138
86
1
506
41
14
13
30
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49716--49778
14
4.6
13
75
14
56
50
4
15
28
1.64
52614--52659
7
6.9
7
85
11
53
8
17
0
73
1.07
52594--52659
13
4.9
13
78
14
55
10
15
0
74
1.07
52604--52695
43
2.1
44
80
13
111
8
16
0
75
1.04
52614--52659
13
3.5
13
85
8
58
8
17
0
73
1.07
52607--52691
15
5.9
14
72
14
59
7
17
0
75
1.02
52609--52694
21
4.1
21
74
18
81
8
17
0
74
1.05
53040--53133
39
2.4
39
96
0
170
14
28
14
41
1.86
53059--53127
22
3.4
22
64
25
60
11
33
14
40
1.82
52920--53255
158
2.1
159
90
0
530
22
25
15
37
1.93
53239--53279
19
2.2
19
100
0
82
24
26
4
43
1.74
53121--53394
138
2.0
138
91
0
440
25
22
15
36
1.93
53912--54003
36
2.6
35
81
3
87
44
10
15
29
1.80
54065--54113
22
2.2
22
96
0
89
32
6
20
40
1.77
57107--57141
14
2.5
14
85
0
52
60
14
11
14
1.60
57123--57215
28
3.3
28
89
0
132
52
7
17
22
1.69
59398--60047
139
4.7
138
81
5
670
42
14
12
30
1.82
60325--60387
14
4.6
13
75
14
56
50
4
15
28
1.64
63242--63293
7
7.9
7
87
10
58
9
17
0
73
1.09
63222--63272
13
3.8
13
80
14
59
13
11
0
74
1.07
63242--63326
6
13.3
6
73
17
57
8
17
0
74
1.06
63242--63293
13
3.9
13
82
7
61
9
17
0
73
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63269--63323
23
2.4
23
82
11
69
5
18
0
76
0.97
63674--63767
39
2.4
39
96
0
170
14
28
14
41
1.86
63693--63761
22
3.4
22
64
25
60
11
33
14
40
1.82
63554--63889
158
2.1
159
90
0
530
22
25
15
37
1.93
63873--63913
19
2.2
19
100
0
82
24
26
4
43
1.74
63755--64028
138
2.0
138
91
0
440
25
22
15
36
1.93
64546--64637
36
2.6
35
81
3
87
44
9
16
29
1.79
64699--64752
22
2.5
22
87
0
81
37
5
18
38
1.74
67755--67830
28
2.7
28
85
0
107
50
6
17
26
1.70
67795--67838
20
2.2
20
83
0
52
56
6
13
22
1.61
69957--70606
139
4.7
138
82
6
674
42
13
12
30
1.82
70909--70945
14
2.8
13
88
8
56
48
0
16
35
1.46
72658--72694
19
2.0
20
89
10
60
29
0
0
70
0.88
73592--73704
60
1.9
60
83
3
147
25
24
23
25
2.00
81462--81486
7
3.6
7
100
0
50
72
0
0
28
0.86
82439--82484
24
1.9
24
82
8
58
45
4
2
47
1.34
82573--82620
23
2.1
23
84
7
62
45
0
0
54
0.99
82570--82624
12
4.4
13
75
13
53
45
0
0
54
0.99

Tables:   1

The End!