genome.fa.s4628.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004628.1 Hibiscus syriacus cultivar Beakdansim tig00010360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121621

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2940--2964	13	1.9	13	100	0	50	20	32	0	48	1.50
4387--4411	2	12.5	2	100	0	50	52	0	0	48	1.00
4439--4596	85	1.9	85	84	5	212	29	17	19	34	1.94
4576--4610	13	2.7	13	90	0	52	34	14	20	31	1.92
13139--13262	64	1.9	64	100	0	248	37	14	16	32	1.89
13352--13395	22	2.0	23	90	4	72	29	18	4	47	1.68
16500--16525	9	2.9	9	100	0	52	34	0	0	65	0.93
17561--17602	21	2.0	22	85	4	59	45	16	23	14	1.84
17987--18031	23	2.0	23	95	0	81	48	0	6	44	1.29
25250--25479	112	2.1	111	87	0	334	30	16	17	36	1.92
29249--29294	18	2.5	18	89	10	67	0	32	23	43	1.54
29259--29309	18	2.8	19	85	5	52	1	27	25	45	1.64
30867--30935	21	3.2	21	78	8	75	17	24	34	23	1.96
30886--30948	23	2.7	23	87	0	81	17	23	34	23	1.96
41791--42018	112	2.0	112	90	0	359	28	16	18	36	1.93
43453--43501	14	3.5	14	82	0	62	26	12	4	57	1.53
43543--43608	2	33.0	2	100	0	132	50	0	0	50	1.00
47806--47850	19	2.4	19	80	20	51	20	8	0	71	1.12
53340--53403	30	2.1	30	88	0	92	23	28	23	25	2.00
57212--57264	22	2.4	22	84	9	72	24	5	11	58	1.54
60684--60757	35	2.1	35	85	2	96	50	9	16	24	1.74
61697--61749	23	2.4	22	81	9	63	22	5	13	58	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62615--62664	14	3.8	13	80	17	50	24	4	0	72	1.02
62630--62670	14	2.9	15	79	13	52	19	7	0	73	1.07
64934--65014	14	5.9	14	75	15	62	77	0	17	4	0.93
64937--64968	10	3.1	11	86	13	50	68	0	25	6	1.12
64934--65040	23	4.9	21	76	18	78	77	1	14	5	1.03
64930--65042	29	4.0	28	77	15	83	76	1	15	5	1.04
64939--65115	20	8.6	20	70	17	98	75	2	15	6	1.10
64969--65070	28	3.6	27	77	13	91	78	2	11	6	1.05
64972--65086	52	2.2	52	78	17	123	76	2	13	6	1.10
64970--65115	6	24.7	6	68	19	67	76	2	13	6	1.09
64959--65121	12	13.0	12	68	20	54	75	2	14	7	1.13
66301--66391	29	3.2	28	72	10	76	50	3	5	40	1.42
66314--66394	28	2.9	27	79	5	81	46	2	8	41	1.48
66344--66566	29	7.7	28	81	6	196	53	7	5	32	1.53
66340--66566	87	2.6	85	80	6	224	54	7	5	32	1.53
68453--68616	61	2.7	61	80	1	177	36	17	20	26	1.94
72073--72181	9	11.6	10	70	23	53	4	19	0	76	0.96
72073--72181	28	3.9	27	77	11	112	4	19	0	76	0.96
72438--72485	2	24.0	2	100	0	96	50	0	0	50	1.00
76304--76343	21	2.0	20	86	13	57	62	7	12	17	1.52
77301--77329	11	2.6	11	100	0	58	48	6	6	37	1.57
79325--79380	29	1.9	29	82	7	69	53	1	12	32	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81311--81420	2	55.0	2	100	0	220	50	0	0	50	1.00
82647--82689	19	2.3	19	100	0	86	23	4	18	53	1.63
83208--83232	13	1.9	13	100	0	50	72	8	20	0	1.10
84859--84914	26	2.1	26	78	18	62	35	3	1	58	1.26
90533--90706	59	2.9	59	86	0	222	36	21	5	36	1.76
90625--90709	31	2.9	28	69	19	75	32	24	3	38	1.73
98207--98246	21	1.9	21	89	0	62	25	40	25	10	1.86
100504--100530	14	1.9	14	100	0	54	29	14	0	55	1.40
104143--104202	28	2.2	28	87	3	86	53	6	11	28	1.62
109125--109177	3	17.7	3	80	7	54	32	1	3	62	1.24
110075--110122	9	5.6	8	83	11	60	83	0	10	6	0.81
110075--110122	18	2.8	17	84	6	69	83	0	10	6	0.81
110099--110136	19	2.0	20	94	5	69	78	0	10	10	0.95
110075--110136	28	2.3	26	91	8	99	80	0	11	8	0.90
110070--110136	8	7.4	9	79	20	70	77	0	13	8	0.98
110998--111479	136	3.5	135	90	1	714	34	17	22	25	1.96
111744--111796	3	17.7	3	80	7	54	33	1	5	58	1.32
112688--112742	8	6.8	8	97	2	101	78	0	10	10	0.98
112671--112743	8	8.6	8	85	8	65	79	0	10	9	0.94
112671--112742	32	2.5	27	82	15	74	79	0	11	9	0.95
113621--114113	136	3.6	135	87	3	711	35	17	21	26	1.95

Tables:   1

The End!