Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000463.1 Hibiscus syriacus cultivar Beakdansim tig00000859_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74275

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
397--476
39
2.1
39
90
2
126
37
5
15
42
1.68
10408--10449
9
4.7
9
80
11
50
28
14
0
57
1.38
11163--11190
2
14.0
2
100
0
56
50
0
0
50
1.00
11337--11378
19
2.4
19
88
11
63
54
7
0
38
1.28
11712--11766
26
2.1
26
83
6
67
50
1
12
34
1.51
11775--11822
16
3.2
15
82
5
53
72
4
2
20
1.11
11790--11832
16
2.7
15
82
10
50
67
0
2
30
1.03
12518--12572
3
18.3
3
92
0
92
32
3
0
63
1.12
18899--19017
54
2.2
54
95
3
213
35
20
20
24
1.96
25478--25509
16
2.0
16
100
0
64
50
6
12
31
1.65
26166--26205
18
2.2
18
86
0
53
5
30
17
47
1.69
27768--27826
21
2.8
21
97
0
109
11
25
35
27
1.91
27768--27846
21
3.7
21
88
5
97
13
24
34
27
1.93
31653--31692
21
1.9
21
85
10
55
35
10
2
52
1.48
32927--32977
20
2.5
20
96
3
93
21
29
29
19
1.98
36280--36431
31
4.9
31
75
10
114
29
17
19
33
1.95
36298--36383
32
2.8
32
87
3
122
31
16
18
33
1.93
37178--37222
22
2.1
22
91
4
74
15
24
33
26
1.95
37180--37227
22
2.3
21
86
10
64
18
22
35
22
1.96
38049--38122
29
2.6
29
78
6
78
16
22
27
33
1.95
38144--38185
19
2.2
19
95
0
75
21
50
21
7
1.72
38182--38218
7
5.4
7
87
6
58
18
29
27
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45430--45504
29
2.5
30
78
8
82
16
28
26
29
1.96
45430--45524
19
4.9
19
76
13
68
14
27
28
29
1.95
45526--45567
19
2.2
19
95
0
75
23
52
19
4
1.65
45564--45594
7
4.4
7
100
0
62
16
29
29
25
1.96
51190--51238
25
2.0
25
84
4
64
48
2
16
32
1.57
54848--54987
72
1.9
72
89
2
219
38
7
10
43
1.67
55163--55272
31
3.5
31
79
9
116
38
8
9
44
1.66
55162--55246
31
2.7
32
85
7
120
38
7
10
43
1.67
55610--55642
11
2.8
12
86
13
50
42
0
0
57
0.98
55601--55648
23
2.1
23
84
7
62
39
0
2
58
1.10
61388--61512
31
4.0
31
86
2
153
39
20
17
23
1.92
63247--63317
24
3.0
23
78
10
72
76
5
1
16
1.05
63265--63317
12
4.5
11
79
11
52
79
5
1
13
0.99
63275--63320
12
3.9
12
81
13
60
80
2
2
15
0.91
64077--64120
17
2.5
18
78
14
56
75
2
4
18
1.09
65404--65456
15
3.5
15
80
15
65
67
1
0
30
1.01
65392--65456
27
2.3
30
86
7
91
70
1
1
26
1.04
65452--65717
11
21.3
11
65
28
67
43
7
2
45
1.46
65468--65745
37
7.2
37
91
4
394
43
7
2
46
1.44
65468--65745
76
3.6
74
88
6
394
43
7
2
46
1.44
65720--65794
2
37.5
2
79
10
64
46
4
1
48
1.29
65706--65764
28
2.1
28
90
0
91
45
6
1
45
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66173--66275
41
2.5
41
87
0
152
36
19
33
10
1.86
66805--67215
65
6.4
63
81
8
357
37
10
20
30
1.87
66805--67215
130
3.2
129
80
6
451
37
10
20
30
1.87
67991--68043
21
2.5
22
90
9
83
30
16
26
26
1.97
68908--68998
31
2.9
31
82
6
121
25
17
23
34
1.96
69748--69960
36
6.1
36
73
14
187
38
12
20
27
1.89
69776--70028
101
2.5
102
85
1
337
37
11
20
29
1.88
70565--70612
24
2.0
24
100
0
96
41
8
20
29
1.81
71363--71424
14
4.4
14
75
15
65
3
16
8
72
1.21
73563--73591
13
2.1
14
93
6
51
48
13
6
31
1.69

Tables:   1

The End!