genome.fa.s4631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004631.1 Hibiscus syriacus cultivar Beakdansim tig00010364_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70811

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2271--2318	23	2.1	23	100	0	96	29	4	41	25	1.74
6440--6489	19	2.6	19	93	0	82	22	30	26	22	1.99
9999--10059	3	21.0	3	90	6	99	67	0	0	32	0.91
10283--10668	117	3.3	116	88	3	528	30	19	12	37	1.89
10648--10824	94	1.9	95	82	3	223	29	18	17	34	1.94
11760--12559	83	9.7	83	97	0	1414	37	23	13	25	1.92
20966--20998	15	2.3	15	89	5	50	48	3	0	48	1.17
24419--24443	7	3.6	7	100	0	50	32	0	0	68	0.90
26502--26542	14	2.9	15	92	7	68	39	0	0	60	0.96
26538--26599	3	20.7	3	96	0	106	62	0	3	33	1.11
33871--33920	19	2.6	19	93	0	82	22	30	26	22	1.99
36731--36837	42	2.6	42	71	12	112	31	20	22	25	1.98
37103--37209	42	2.6	42	81	1	135	33	19	18	28	1.96
36926--37577	258	2.5	258	86	3	913	34	15	15	33	1.90
38502--38540	18	2.1	19	85	4	53	23	15	17	43	1.87
47135--47176	11	4.1	10	82	14	50	66	0	0	33	0.92
47135--47189	3	19.0	3	75	20	55	65	0	0	34	0.93
47138--47189	19	2.8	18	81	16	61	65	0	0	34	0.93
47554--47605	22	2.2	24	90	6	81	51	19	17	11	1.75
48735--48801	31	2.2	31	86	0	89	43	13	22	20	1.87
49484--49545	5	11.8	5	76	19	56	74	0	6	19	1.03
49477--49513	13	2.9	13	92	4	58	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49480--49547	30	2.3	30	79	5	75	75	0	5	19	1.01
50756--51122	38	9.9	38	77	13	299	44	6	3	45	1.46
50844--50873	2	15.5	2	93	6	53	50	0	0	50	1.00
50926--51121	36	5.7	36	78	15	216	42	6	3	46	1.47
50986--51048	26	2.5	26	92	2	101	44	7	3	44	1.49
50986--51137	26	6.1	25	75	13	100	45	7	1	45	1.42
50948--51085	63	2.2	63	88	5	199	42	7	3	46	1.49
50926--51138	99	2.2	98	88	5	313	43	6	3	46	1.46
51088--51152	26	2.4	27	90	7	98	50	7	0	41	1.31
51088--51152	28	2.5	26	87	7	87	50	7	0	41	1.31
51768--51820	21	2.5	21	87	0	79	20	24	18	35	1.95
51810--51943	20	6.7	20	87	1	196	40	20	20	18	1.92
52132--52207	22	3.5	22	88	0	107	25	39	15	19	1.91
52303--52393	20	4.6	20	84	1	94	15	17	21	45	1.86
52357--52400	20	2.2	20	91	0	70	11	13	20	54	1.69
53567--53609	20	2.2	20	91	0	68	23	18	27	30	1.98
53596--53749	20	7.7	20	86	2	193	20	18	21	38	1.93
53746--53791	21	2.2	21	88	0	65	39	17	23	19	1.92
54006--54031	3	8.7	3	100	0	52	34	0	0	65	0.93
56298--56340	17	2.8	15	77	16	52	32	0	2	65	1.06
56298--56347	15	3.2	16	81	13	61	32	0	2	66	1.03
56368--56466	21	4.3	23	74	20	75	29	1	4	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56389--56494	15	6.9	16	73	19	66	33	1	1	62	1.17
56389--56427	17	2.4	17	87	8	55	33	2	2	61	1.23
56381--56471	9	11.5	8	69	20	50	28	1	3	67	1.14
56381--56480	23	4.3	23	76	13	80	31	1	3	65	1.15
56519--56573	28	2.0	27	85	7	74	45	18	7	29	1.76
56970--57081	46	2.5	45	89	4	165	45	5	12	36	1.65
60935--61006	2	36.5	2	91	2	119	50	1	0	48	1.09
65269--65625	179	2.0	177	94	4	630	26	24	15	33	1.95
66438--66532	44	2.1	45	86	11	133	32	25	25	16	1.96
66446--66545	23	4.4	23	84	6	132	34	25	25	16	1.95
67151--67199	16	3.0	17	85	8	66	38	16	18	26	1.91
67180--67230	21	2.5	21	84	9	61	33	23	19	23	1.97

Tables:   1

The End!