Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004632.1 Hibiscus syriacus cultivar Beakdansim tig00010365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54676

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4802--4869
16
4.4
16
80
14
72
25
13
17
44
1.85
4830--4884
16
3.6
16
85
9
62
27
9
20
43
1.81
5888--5928
21
1.9
22
90
5
66
60
9
19
9
1.55
12492--12550
22
2.8
22
80
10
70
72
0
20
6
1.06
14633--14665
14
2.3
15
90
10
52
18
3
0
78
0.87
18182--18303
36
3.3
35
69
17
102
31
18
9
39
1.84
18161--18387
75
3.0
75
88
4
318
33
15
12
39
1.85
18195--18316
36
3.3
36
69
15
113
31
15
11
40
1.83
18362--18612
39
6.5
39
90
0
353
32
14
17
35
1.90
18634--18892
137
1.9
138
90
0
412
33
16
23
27
1.95
21846--21882
12
2.9
13
84
15
51
40
0
10
48
1.38
21955--21988
15
2.3
15
100
0
68
50
5
8
35
1.58
22657--22688
2
16.5
2
93
6
57
53
0
0
46
1.00
35704--35745
13
3.2
13
83
6
57
45
0
0
54
0.99
36010--36214
65
3.2
65
92
0
331
37
5
16
40
1.72
45044--45082
19
2.1
19
85
9
53
46
2
7
43
1.46
49399--49469
31
2.3
31
87
4
108
33
19
11
35
1.88
52599--52641
23
2.0
22
90
9
70
58
2
9
30
1.42
53325--53466
72
2.0
69
81
10
162
28
14
27
29
1.95
53347--53490
72
2.0
73
95
1
263
27
15
26
30
1.96

Tables:   1

The End!