genome.fa.s4635.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004635.1 Hibiscus syriacus cultivar Beakdansim tig00010375_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155746

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1505--1620	35	3.2	36	85	6	155	34	4	17	43	1.68
6114--6197	37	2.3	38	87	6	120	33	4	19	42	1.72
8455--8491	18	2.1	18	89	0	56	48	0	0	51	1.00
8991--9024	17	2.0	17	88	0	50	52	0	0	47	1.00
9478--9547	34	2.1	34	81	5	79	52	4	2	40	1.36
13353--13395	19	2.3	19	100	0	86	48	16	9	25	1.75
20709--20967	58	4.5	58	83	5	294	44	13	5	36	1.67
22295--22437	71	2.0	71	91	0	232	30	22	13	33	1.92
22489--22631	71	2.0	71	94	0	250	34	17	13	34	1.89
22293--22678	194	2.0	192	91	2	630	31	19	12	36	1.89
27128--27163	13	2.8	13	87	4	56	25	27	25	22	2.00
28932--28959	6	4.7	6	100	0	56	50	0	50	0	1.00
33344--34630	106	12.1	106	93	0	2074	33	25	18	23	1.97
34833--35247	84	5.0	83	76	5	322	29	24	20	25	1.99
36371--36422	4	13.8	4	91	4	65	28	0	0	71	0.87
36377--36447	29	2.4	29	86	4	90	28	1	0	70	0.96
37984--38055	31	2.3	31	92	0	117	16	20	33	29	1.95
41705--41748	23	2.0	23	90	4	72	34	4	6	54	1.47
42837--43003	60	2.7	62	73	11	155	52	4	14	29	1.60
43888--43944	2	29.5	2	78	7	64	50	0	0	49	1.00
44037--44121	35	2.4	36	88	4	136	12	38	15	32	1.85
45450--45478	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45893--45946	2	27.5	2	92	3	92	53	0	0	46	1.00
45994--46036	18	2.5	17	85	7	61	67	2	4	25	1.22
46391--46495	37	2.8	38	85	4	142	29	14	14	41	1.85
47039--47670	105	6.0	105	89	2	898	21	17	26	34	1.95
47870--47945	36	2.1	36	90	0	116	40	15	21	22	1.90
47957--48033	39	2.0	39	86	0	109	40	11	20	27	1.87
48066--48140	39	1.9	39	83	5	98	37	13	22	26	1.91
47845--48163	105	3.1	104	91	3	511	36	11	20	30	1.89
48279--48392	36	3.2	36	73	2	113	43	14	16	25	1.85
48234--48408	72	2.4	74	84	8	216	41	13	18	26	1.87
49548--50084	183	2.9	183	94	0	941	31	21	20	26	1.98
54663--54705	18	2.5	17	85	7	61	67	2	4	25	1.22
54589--54713	62	2.1	59	79	11	128	60	4	3	32	1.31
62156--62230	36	2.1	36	92	0	123	36	17	4	42	1.68
66634--66686	23	2.2	24	83	3	63	52	0	1	45	1.11
66617--66696	23	3.5	22	73	19	58	51	1	2	45	1.22
66617--66700	34	2.4	35	75	15	86	51	1	2	45	1.22
68580--68609	6	5.0	6	100	0	60	16	50	0	33	1.46
68816--68857	9	4.7	9	87	0	57	26	0	2	71	0.98
71511--71580	35	2.0	35	94	0	122	17	2	40	40	1.64
79248--79333	3	28.3	3	91	4	138	34	1	0	63	1.02
81125--81154	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82994--83082	31	2.8	32	80	8	103	19	13	7	59	1.58
89442--89476	15	2.4	15	90	4	54	71	5	14	8	1.29
89588--89623	11	3.3	11	96	0	63	38	16	30	13	1.88
90502--90571	32	2.2	32	84	0	86	30	12	27	30	1.93
90744--90796	21	2.5	21	96	0	97	18	13	13	54	1.70
90950--91214	46	6.0	46	71	12	194	27	29	15	26	1.96
91193--91470	135	2.1	134	89	3	416	29	26	16	27	1.97
91629--91695	3	22.3	3	90	6	109	32	1	1	64	1.12
93491--93562	2	36.0	2	100	0	144	50	0	0	50	1.00
95237--95316	3	27.7	3	79	12	87	36	0	0	63	0.94
95707--95762	21	2.8	20	89	5	78	55	8	33	1	1.42
96417--96476	29	2.0	30	81	9	70	38	10	1	50	1.46
108380--108424	16	2.8	16	83	10	56	28	8	6	55	1.56
109165--110096	83	11.1	83	94	2	1609	27	13	21	37	1.91
109918--110159	92	2.5	99	88	10	365	28	13	22	35	1.92
110860--111394	108	4.9	108	87	9	722	36	15	19	28	1.93
111516--111868	179	2.0	179	90	9	562	39	18	12	29	1.88
111914--111990	3	25.7	3	78	10	77	36	0	0	63	0.95
111919--111998	26	3.2	26	86	6	105	38	0	0	61	0.96
111929--111989	23	2.8	22	82	7	70	40	0	0	59	0.98
112378--112432	6	9.7	6	80	11	62	54	10	34	0	1.36
112378--112432	21	2.8	20	89	8	78	54	10	34	0	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113324--113370	14	3.5	13	80	13	51	40	2	2	55	1.24
116912--116957	24	1.9	24	90	0	74	23	10	17	47	1.79
119506--120010	158	3.3	156	80	6	596	25	17	6	50	1.69
120224--120263	21	2.0	20	85	5	53	40	2	2	55	1.27
128515--128552	17	2.2	18	86	9	53	60	7	5	26	1.46
128947--128980	14	2.4	15	90	9	54	52	0	0	47	1.00
129327--129365	19	2.1	19	85	9	53	35	2	2	58	1.25
129414--129450	2	19.5	2	86	10	51	48	2	0	48	1.15
129417--129456	12	3.2	12	89	7	53	50	5	0	45	1.23
130775--130819	15	3.0	16	78	21	53	62	0	0	37	0.96
132095--132160	9	7.1	10	75	17	54	9	10	0	80	0.91
132097--132161	10	7.0	10	74	20	52	9	12	0	78	0.96
147962--148000	18	2.2	18	90	4	62	64	5	5	25	1.35
148364--148410	19	2.5	18	77	16	51	59	0	2	38	1.09
150177--150225	14	3.8	13	86	10	57	57	0	0	42	0.99
150187--150226	2	21.0	2	90	10	66	52	0	0	47	1.00
150298--150337	20	2.0	20	100	0	80	15	10	25	50	1.74

Tables:   1

The End!