genome.fa.s4637.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004637.1 Hibiscus syriacus cultivar Beakdansim tig00010381_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155859

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113--1144	17	1.9	17	93	6	57	12	12	12	62	1.55
9259--9290	17	1.9	17	93	6	57	12	12	12	62	1.55
18717--18755	21	1.9	21	89	5	62	10	25	41	23	1.86
18738--18797	19	2.9	20	85	9	68	16	26	35	21	1.95
22592--22631	21	1.9	21	85	10	55	35	10	2	52	1.48
38802--38846	19	2.4	19	96	0	81	44	15	17	22	1.86
38810--38859	19	2.5	19	90	6	73	52	18	12	18	1.75
45464--45509	23	2.0	24	86	4	67	39	2	4	54	1.32
51715--51772	2	29.0	2	100	0	116	50	0	0	50	1.00
53203--53231	15	1.9	15	100	0	58	37	0	0	62	0.96
54569--54640	23	2.9	25	78	14	78	45	4	0	50	1.21
54580--54640	23	2.5	24	86	5	88	44	4	0	50	1.23
54584--54658	25	2.9	24	72	20	62	44	4	0	52	1.20
54649--54700	27	2.0	26	88	3	77	34	1	3	59	1.27
55588--55652	19	3.4	19	70	8	69	43	7	9	40	1.65
55579--55652	38	1.9	38	100	0	148	45	10	8	35	1.69
57709--58030	171	1.9	173	88	3	490	39	9	18	32	1.82
57882--58685	372	2.1	376	82	5	964	41	9	16	31	1.81
57882--58685	192	4.3	187	82	3	927	41	9	16	31	1.81
62865--63331	200	2.3	202	79	5	475	36	14	11	36	1.83
62865--63331	100	4.7	100	78	6	408	36	14	11	36	1.83
67673--67697	13	1.9	13	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67714--67757	23	1.9	23	85	0	61	65	0	4	29	1.12
67779--67809	3	10.3	3	92	0	53	64	0	3	32	1.09
69198--69230	2	16.5	2	100	0	66	48	0	0	51	1.00
69232--69276	3	14.3	3	81	9	54	60	0	0	40	0.97
69199--69276	19	4.1	18	80	14	70	55	0	0	44	0.99
69231--69288	16	3.5	16	76	15	55	55	0	0	44	0.99
69241--69290	22	2.3	23	83	13	70	54	0	0	46	1.00
69411--70082	45	14.8	45	89	1	948	35	18	22	23	1.95
69411--70082	181	3.7	181	90	2	1017	35	18	22	23	1.95
70741--70817	22	3.5	22	94	0	136	42	11	11	33	1.78
75467--75534	7	9.4	7	71	17	50	2	20	0	76	0.92
75450--75501	16	3.1	17	81	13	72	3	21	0	75	0.97
78386--78455	36	1.9	36	82	5	88	54	8	18	18	1.68
79535--79638	52	2.0	52	96	0	190	31	16	16	35	1.91
80820--80875	24	2.5	22	77	11	60	64	1	5	28	1.26
81675--81717	22	1.9	23	85	4	61	65	0	4	30	1.13
81742--81778	3	12.3	3	100	0	74	67	0	0	32	0.91
82025--82055	10	3.1	10	100	0	62	70	9	0	19	1.14
83193--83244	3	16.7	3	76	7	50	57	0	0	42	0.98
83181--83244	19	3.5	17	76	18	58	56	0	0	43	0.99
83202--83242	22	1.9	21	90	5	64	56	0	0	43	0.99
84173--85051	295	3.0	295	87	2	1244	28	31	4	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87127--87171	14	3.3	14	82	11	58	33	0	0	66	0.92
87123--87162	14	2.7	15	88	7	64	35	0	0	65	0.93
87123--87169	16	3.1	16	76	14	55	36	0	0	63	0.94
87123--87178	27	2.0	29	82	6	71	41	0	0	58	0.98
87141--87211	37	1.9	36	83	11	90	35	0	2	61	1.10
88357--88465	41	2.7	41	84	4	141	38	15	15	30	1.89
96188--96248	21	3.0	21	80	2	79	44	18	34	3	1.66
96218--96287	21	3.3	21	81	0	77	41	17	40	1	1.58
96627--96738	42	2.6	41	76	12	109	32	21	25	21	1.98
96627--96767	43	3.3	43	75	13	130	31	20	24	24	1.98
96643--96839	43	4.6	43	76	6	157	31	23	19	24	1.98
97735--97785	25	2.0	25	84	0	66	43	0	17	39	1.49
97965--98079	60	1.9	59	83	1	149	29	13	16	40	1.87
98465--98502	20	2.0	20	89	5	60	28	0	0	71	0.87
101646--101696	21	2.5	20	83	6	66	43	1	3	50	1.31
102913--102945	13	2.3	15	90	10	52	66	3	6	24	1.28
103337--103438	34	2.9	36	88	11	165	27	14	14	43	1.85
103983--105003	105	9.9	102	90	4	1522	22	18	25	33	1.97
103983--105003	305	3.3	309	92	3	1632	22	18	25	33	1.97
105150--105185	18	2.0	18	88	0	54	41	30	8	19	1.81
105601--105655	22	2.5	22	100	0	110	23	12	27	36	1.91
106309--106390	17	5.0	16	71	16	53	1	17	8	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107494--107532	8	5.0	8	84	6	53	58	12	17	10	1.61
107494--107532	15	2.5	15	87	4	51	58	12	17	10	1.61
108912--108953	15	2.6	17	81	14	61	71	0	11	16	1.14
110112--110141	2	15.0	2	92	0	51	53	0	0	46	1.00
110637--110674	14	2.7	15	84	12	53	68	2	5	23	1.23
111065--111165	34	2.9	35	91	8	161	28	14	12	43	1.83
113071--113109	19	2.1	19	85	4	53	53	0	2	43	1.14
113117--113151	15	2.4	15	95	4	63	34	0	2	62	1.10
113206--113339	37	3.5	39	78	9	125	47	2	0	50	1.19
113503--113551	21	2.4	21	79	3	55	53	2	0	44	1.12
117273--117342	21	3.4	21	72	4	79	25	15	24	34	1.95
117787--117816	14	2.1	14	93	0	51	63	0	0	36	0.95
119147--119217	37	1.9	37	85	0	97	22	12	9	54	1.67
123582--123607	2	13.0	2	100	0	52	50	0	0	50	1.00
133830--134264	45	9.6	45	91	0	690	22	21	11	44	1.84
140875--140906	14	2.3	14	100	0	64	21	0	21	56	1.43
148484--148895	81	5.1	81	85	2	463	37	11	19	31	1.87

Tables:   1

The End!