Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004638.1 Hibiscus syriacus cultivar Beakdansim tig00010387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89821

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8102--8155
15
3.2
15
73
26
54
77
11
0
11
0.99
8107--8144
11
3.5
11
92
7
69
78
10
0
10
0.95
8102--8154
25
2.1
24
86
13
72
77
11
0
11
1.00
8110--8162
21
2.5
20
85
14
63
81
9
1
7
0.96
8111--8168
25
2.4
23
81
13
71
82
6
3
6
0.93
9107--9377
141
1.9
141
85
4
377
27
29
18
24
1.98
9603--9663
20
3.1
19
81
15
61
22
0
0
77
0.78
9627--9667
3
14.0
3
84
5
57
26
0
0
73
0.84
9605--9663
9
6.6
9
83
11
59
23
0
0
76
0.79
9605--9667
12
5.2
12
77
16
60
25
0
0
74
0.82
11286--11329
18
2.4
18
85
7
63
20
4
4
70
1.23
15242--15277
17
2.1
17
100
0
72
27
0
11
61
1.30
15872--15911
17
2.4
17
86
0
62
55
5
0
40
1.22
16130--16191
21
3.0
21
90
0
97
22
22
24
30
1.99
16529--16553
2
12.5
2
100
0
50
48
0
0
52
1.00
17599--17636
16
2.4
16
86
8
51
34
0
0
65
0.93
17600--17651
24
2.1
26
82
7
63
32
0
1
65
1.04
20650--20692
3
14.3
3
100
0
86
0
32
0
67
0.91
21659--21692
17
1.9
18
88
5
52
20
8
0
70
1.13
22423--22490
6
11.3
6
90
0
109
20
11
33
33
1.89
24716--24746
8
3.9
8
95
0
53
35
51
9
3
1.51
28455--28660
108
1.9
108
90
0
331
40
9
10
39
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29154--29244
43
2.1
43
100
0
182
49
13
8
28
1.71
29692--29722
15
2.1
15
100
0
62
25
29
6
38
1.81
34876--34970
27
3.6
27
94
2
167
43
15
10
30
1.81
36872--36906
16
2.2
16
94
0
61
28
14
5
51
1.65
36841--37034
102
2.0
96
89
6
298
36
12
9
41
1.76
40349--40380
16
2.0
16
100
0
64
56
25
12
6
1.59
40446--40530
10
8.7
10
74
19
81
60
21
9
9
1.56
40463--40529
16
4.2
16
86
0
89
61
22
7
8
1.51
40460--40524
32
2.0
32
90
0
103
60
23
9
7
1.53
41749--41815
33
2.2
29
78
19
75
29
17
26
25
1.98
42040--42095
24
2.3
24
87
0
76
55
19
8
16
1.67
42057--42102
24
1.9
24
90
0
74
52
19
10
17
1.74
56880--56953
38
1.9
39
91
2
123
33
24
27
14
1.94
56882--56970
38
2.3
38
84
1
106
32
22
25
19
1.97
58290--58351
30
2.1
30
87
0
88
33
12
8
45
1.72
60713--60808
39
2.5
39
77
6
113
30
22
27
19
1.98
61555--61588
17
2.0
17
94
0
59
23
20
41
14
1.89
62049--62114
30
2.2
30
84
13
91
39
10
6
43
1.64
65980--66014
18
1.9
18
88
0
52
8
34
14
42
1.76
65990--66037
24
2.0
24
91
0
78
4
33
16
45
1.67
69782--69893
10
11.1
10
94
1
62
54
0
0
44
1.06
69780--69870
2
45.5
2
100
0
182
50
0
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70258--70345
39
2.3
39
87
0
122
31
21
29
17
1.96
74015--74103
39
2.3
39
84
3
117
31
23
28
16
1.96
75277--75313
14
2.6
14
95
0
65
51
10
21
16
1.74
79372--79419
24
2.0
24
91
0
78
6
31
16
45
1.72
79416--79455
18
2.2
18
86
0
53
5
40
10
45
1.60
79902--79952
4
13.5
4
80
12
63
27
0
0
72
0.85
83195--83221
2
13.5
2
100
0
54
51
0
0
48
1.00
83633--83708
39
1.9
39
83
0
98
34
22
23
19
1.97
85856--85931
39
1.9
40
91
2
127
34
25
26
14
1.94
85858--85948
39
2.3
39
84
1
110
32
23
25
18
1.97
87256--87317
30
2.1
30
87
0
88
37
11
8
43
1.70
88173--88199
14
1.9
14
100
0
54
7
22
29
40
1.81
89247--89293
2
23.5
2
91
0
76
51
48
0
0
1.00

Tables:   1

The End!