Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000464.1 Hibiscus syriacus cultivar Beakdansim tig00000860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 130706
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:2350 original size:17 final size:17
Alignment explanation
Indices: 2328--2363 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
2318 AAATAATAAA
2328 TTTATTATTATTTTATT
1 TTTATTATTATTTTATT
*
2345 TTTATTTTTATTTTATT
1 TTTATTATTATTTTATT
2362 TT
1 TT
2364 GTTTGTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTATTATTATTTTATT
Found at i:7063 original size:167 final size:168
Alignment explanation
Indices: 6719--7278 Score: 609
Period size: 167 Copynumber: 3.3 Consensus size: 168
6709 GCAACAATTT
* * * *
6719 TTCACTTAATAATAGCCATAAATGATGTCCCCCATTGGGGAACTATTCTCATCAACTCCTATCT-
1 TTCAGTTAATAATAGCCATAAATGATGTCCCCCATT-GGGAACTATTCACGTCAACCCCTAT-TA
* *
6783 TGTTGATA-GGATGT-GACACTATGGCATGGAAGAGATTCTCTGGAAAAGGTGAAAGCGCTTCTT
64 TATTGA-AGGGAT-TAGACACTATGGCATGGAAGAGATTCTCTGGAAAAAGTGAAAGCGCTTCTT
* * * * *
6846 GTGGGACGCGTCTTCCCTTTTCGTCAAAGA-TCTCTGTATTA
127 GTGGGACGCGCCTTCCCTTTTCTTCAGAGATTCTCTGCATTC
* * *
6887 TTTAGTTAATGATAGCCATAAATGATGTCCCCCGTTGGAGAA-TATTCACGTCAACCCCTATTAT
1 TTCAGTTAATAATAGCCATAAATGATGTCCCCCATTGG-GAACTATTCACGTCAACCCCTATTAT
* * * * * *
6951 ATTGAAGGGATTAGATACTATGACATGGTAGAGATTCTCTGGAAAAAGAGAAAACGCTTATT-TG
65 ATTGAAGGGATTAGACACTATGGCATGGAAGAGATTCTCTGGAAAAAGTGAAAGCGCTTCTTGTG
* **
7015 GAACGCGCCTTCTATTTTCTTCAGAGATTCTCTGCATTC
130 GGACGCGCCTTCCCTTTTCTTCAGAGATTCTCTGCATTC
* *
7054 TTCAGTTAATAATAGCCATAAATGATGTCTCTCATTGGGAAACTATTCACGTCAACCCCTATTAT
1 TTCAGTTAATAATAGCCATAAATGATGTCCCCCATTGGG-AACTATTCACGTCAACCCCTATTAT
* * * * * *
7119 GTTTGATGGGATGAGACATTATGGCAT-GACAGAGATTATCT--AAAAAGGTGAAAGCACTTCTT
65 -ATTGAAGGGATTAGACACTATGGCATGGA-AGAGATTCTCTGGAAAAA-GTGAAAGCGCTTCTT
* * * *
7181 GTGGGATGTGCTTTCCCTTTTCGTT-AGAGATTCTCTTCATTC
127 GTGGGACGCGCCTTCCCTTTTC-TTCAGAGATTCTCTGCATTC
* ** *
7223 TTCAGTTAATAATAGCCATAAATGATGTCCCCTATAAGGAACTATTCACATCAACC
1 TTCAGTTAATAATAGCCATAAATGATGTCCCCCATTGGGAACTATTCACGTCAACC
7279 TTTATTATGT
Statistics
Matches: 327, Mismatches: 53, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
166 27 0.08
167 118 0.36
168 85 0.26
169 95 0.29
170 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (168 bp):
TTCAGTTAATAATAGCCATAAATGATGTCCCCCATTGGGAACTATTCACGTCAACCCCTATTATA
TTGAAGGGATTAGACACTATGGCATGGAAGAGATTCTCTGGAAAAAGTGAAAGCGCTTCTTGTGG
GACGCGCCTTCCCTTTTCTTCAGAGATTCTCTGCATTC
Found at i:7466 original size:33 final size:33
Alignment explanation
Indices: 7424--7521 Score: 117
Period size: 33 Copynumber: 3.0 Consensus size: 33
7414 TATAAGATTT
*
7424 TGTTTGTGGTCCT-ACTTTTAAAACTTCTCATTG
1 TGTTTGTGGTCCTAACTTTCAAAA-TTCTCATTG
* *
7457 TGTTTGTGGTCTTAACTTTCAAAATTCTCATTT
1 TGTTTGTGGTCCTAACTTTCAAAATTCTCATTG
** * *
7490 TGTTTGTGGTCCTCGCCTTCAAACTTCTCATT
1 TGTTTGTGGTCCTAACTTTCAAAATTCTCATT
7522 AAGTTTCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
33 47 0.84
34 9 0.16
ACGTcount: A:0.17, C:0.20, G:0.14, T:0.48
Consensus pattern (33 bp):
TGTTTGTGGTCCTAACTTTCAAAATTCTCATTG
Found at i:8195 original size:6 final size:6
Alignment explanation
Indices: 8172--8236 Score: 71
Period size: 6 Copynumber: 10.8 Consensus size: 6
8162 TTGTAATGTC
* * *
8172 AATTTG AATGTA AATTTG AATTTG AATTT- AGATTTG AATTTG GATTTG
1 AATTTG AATTTG AATTTG AATTTG AATTTG A-ATTTG AATTTG AATTTG
8220 TAA-TTG AATTTG AATTT
1 -AATTTG AATTTG AATTT
8237 TTATTTTTAG
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
5 3 0.06
6 44 0.90
7 2 0.04
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (6 bp):
AATTTG
Found at i:8979 original size:41 final size:42
Alignment explanation
Indices: 8894--8979 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 42
8884 AATATGTTTC
* *
8894 TAATGGTAAGGTAATGTACTCTAAGGTTCATGATAATGCTTT
1 TAATGGTAAGGTAATGTACTCTAAGGTTCATGATAATACATT
*
8936 TAAT-GTAAGGTAATGTACTCTAATG-TCATG-TAATTAACATT
1 TAATGGTAAGGTAATGTACTCTAAGGTTCATGATAA-T-ACATT
8977 TAA
1 TAA
8980 CAAACACAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
39 3 0.08
40 6 0.15
41 26 0.67
42 4 0.10
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (42 bp):
TAATGGTAAGGTAATGTACTCTAAGGTTCATGATAATACATT
Found at i:9062 original size:38 final size:38
Alignment explanation
Indices: 9015--9087 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
9005 AATGAAAATG
* *
9015 TTAAACATTTAACAACCATAAAGATAA-ATTAAAAAAAA
1 TTAAACATTTAACAAACATAAACA-AATATTAAAAAAAA
9053 TTAAACATTTAACAAACATAAACAAATATTAAAAA
1 TTAAACATTTAACAAACATAAACAAATATTAAAAA
9088 CATAACATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 2 0.06
38 30 0.94
ACGTcount: A:0.63, C:0.11, G:0.01, T:0.25
Consensus pattern (38 bp):
TTAAACATTTAACAAACATAAACAAATATTAAAAAAAA
Found at i:9076 original size:17 final size:17
Alignment explanation
Indices: 9016--9076 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
9006 ATGAAAATGT
*
9016 TAAACATTTAACAACCA
1 TAAACATTTAACAAACA
* * *
9033 TAAAGATAAATTAAAAAAAA
1 TAAACAT---TTAACAAACA
9053 TTAAACATTTAACAAACA
1 -TAAACATTTAACAAACA
9071 TAAACA
1 TAAACA
9077 AATATTAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
17 12 0.36
18 8 0.24
20 7 0.21
21 6 0.18
ACGTcount: A:0.62, C:0.13, G:0.02, T:0.23
Consensus pattern (17 bp):
TAAACATTTAACAAACA
Found at i:11374 original size:37 final size:39
Alignment explanation
Indices: 11333--11406 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
11323 CAAAAAAAAG
* *
11333 TTAATTAT-CACAAATAAT-TAATAAAATTAAATATATT
1 TTAATTATACAAAAATAATATAATAAAATAAAATATATT
* *
11370 TTAATTATATAAAAATATTATAATAAAATAAAATATA
1 TTAATTATACAAAAATAATATAATAAAATAAAATATA
11407 ACCATTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 8 0.26
38 7 0.23
39 16 0.52
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (39 bp):
TTAATTATACAAAAATAATATAATAAAATAAAATATATT
Found at i:11449 original size:19 final size:19
Alignment explanation
Indices: 11351--11458 Score: 65
Period size: 19 Copynumber: 5.4 Consensus size: 19
11341 CACAAATAAT
* *
11351 TAATAAAATTAAATATATTT
1 TAATTAAATTAAA-ATATTA
* *
11371 TAATTATATAAAAATATTA
1 TAATTAAATTAAAATATTA
* *
11390 TAA-TAAAATAAAATATAACCA
1 TAATTAAATTAAAATAT---TA
*
11411 TTAATAAAATTTAAATATATTA
1 -TAATTAAA-TTAAA-ATATTA
* *
11433 TAATTATATTAAAATATAA
1 TAATTAAATTAAAATATTA
11452 TAATTAA
1 TAATTAA
11459 TATATTATAA
Statistics
Matches: 66, Mismatches: 15, Indels: 15
0.69 0.16 0.16
Matches are distributed among these distances:
18 10 0.15
19 19 0.29
20 15 0.23
21 7 0.11
22 4 0.06
23 3 0.05
24 4 0.06
25 4 0.06
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
TAATTAAATTAAAATATTA
Found at i:11474 original size:13 final size:13
Alignment explanation
Indices: 11435--11482 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
11425 ATATATTATA
* *
11435 ATTATATTAAAAT
1 ATTATAATAATAT
*
11448 ATAATAATTAATAT
1 ATTATAA-TAATAT
11462 ATTATAATAATAT
1 ATTATAATAATAT
11475 ATTATAAT
1 ATTATAAT
11483 TGAAAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTATAATAATAT
Found at i:11615 original size:44 final size:46
Alignment explanation
Indices: 11503--11616 Score: 118
Period size: 39 Copynumber: 2.6 Consensus size: 46
11493 ATTGTCTTCT
*
11503 AATA-AATATAATAATTAATAAAAAAATTAATTTTATAATATTATATTAA
1 AATATAATATAATAATTAAT-AAAAAACTAA---TATAATATTATATTAA
*
11552 AATTTAATA-AA-AA--AA-AAAAAACTAA-A-AATATTATATTAA
1 AATATAATATAATAATTAATAAAAAACTAATATAATATTATATTAA
11591 AATATAATATAATAATTAATAAAAAA
1 AATATAATATAATAATTAATAAAAAA
11617 TTATTACCTA
Statistics
Matches: 56, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
39 21 0.38
40 3 0.05
41 2 0.04
43 2 0.04
44 15 0.27
46 2 0.04
48 2 0.04
49 5 0.09
50 4 0.07
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (46 bp):
AATATAATATAATAATTAATAAAAAACTAATATAATATTATATTAA
Found at i:15693 original size:21 final size:21
Alignment explanation
Indices: 15645--15705 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
15635 TTCAAAAATT
* * **
15645 ATTTCACGAAAAGATTAAATC
1 ATTTCATGAAAAGGTTAAGGC
15666 ATTTCATGAAAAGGTTAAGGC
1 ATTTCATGAAAAGGTTAAGGC
* *
15687 ATTTCATCAAAAGGATAAG
1 ATTTCATGAAAAGGTTAAG
15706 TCTTTTAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.28
Consensus pattern (21 bp):
ATTTCATGAAAAGGTTAAGGC
Found at i:15720 original size:21 final size:22
Alignment explanation
Indices: 15696--15741 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
15686 CATTTCATCA
* *
15696 AAAGGA-TAAGTCTTTTAATTG
1 AAAGGACTAAGTCCTTTAATCG
15717 AAA-GACTAAGTCCTTTAATCG
1 AAAGGACTAAGTCCTTTAATCG
15738 AAAG
1 AAAG
15742 TGTTGAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.30
Consensus pattern (22 bp):
AAAGGACTAAGTCCTTTAATCG
Found at i:24259 original size:131 final size:131
Alignment explanation
Indices: 24020--24384 Score: 471
Period size: 131 Copynumber: 2.8 Consensus size: 131
24010 TCGATATTGA
* * * *
24020 AAATAGTAATATCTCATTATTTTGGTTGGAGTAATAAATGACTACTTTAAGGCATGAGAGGTCAT
1 AAATAGTAATATCTCTTTATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
* * * * * * * *
24085 TTATTCTCGATTGGAAAGAATAAGATATTACCATTTTCTCTCGAGTTAATATTGATTTTTAAGAC
66 TTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTCGAATCAATATTAAATTTTAAGAC
24150 G
131 G
* * * *
24151 GAATAGTGATATCTCTTTATTTCGATTGGAGTAATAAAT-AGTTGCTATAAGGCATGAGAGGTCA
1 AAATAGTAATATCTCTTTATTTCGATTGGAGTAATAAATGA-CTGCTTTAAGGCATGAGAGGTCA
* * *
24215 TTTATTCTCGTTTGGAAATCATTAGATATTATCGTTTTCACTCGAATCAATATTAAATTTTAAGA
65 TTTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTCGAATCAATATTAAATTTTAAGA
24280 CG
130 CG
* * * * * *
24282 AAATAGTAATATCTCTTCATTTCAATTGGGGTAAGAAATGACTGTTTTAAGGCATGAAAGGTCAT
1 AAATAGTAATATCTCTTTATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
* *
24347 TTATTATCGATTGGAAATAATTAGATATTATCTTTTTC
66 TTATTCTCGATTGGAAATAATTAGATATTATCATTTTC
24385 TCTCTTAAAA
Statistics
Matches: 199, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
130 1 0.01
131 197 0.99
132 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (131 bp):
AAATAGTAATATCTCTTTATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
TTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTCGAATCAATATTAAATTTTAAGAC
G
Found at i:32400 original size:135 final size:135
Alignment explanation
Indices: 32158--33413 Score: 1283
Period size: 135 Copynumber: 9.3 Consensus size: 135
32148 GCATATCGAA
* * * ** * *
32158 CTCGATTCAATCTTCTCTGAGGAACAACAGAATGAATCAACATTTCCAGATCTAATTTTCCCTCA
1 CTCGATTCAATCTTCCCTAAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
* * * * * * * * * *
32223 AGAAGCAAC-ATAATAGATCCCTATTTTCTCTAGATTTGATATTCCTTAAGGAACAGTGAAACAA
66 AGAAGCAGCGA-AACAAATCCCTTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACAA
32287 GTCTGC
130 GTCTGC
* * * * *
32293 CTCGATTCGATCTTCCCTAAAGAACAACGAAATGAATCAATA-TTCATAGATATGATTTTCCCTC
1 CTCGATTCAATCTTCCCTAAAGAACAATGGAATGAATCAACATTTC-TAGATCTGATTTTCCCTC
** * *
32357 AAGAAGCAGCGAAACATGTCCCTTTTTTTTCCAGATTTGATATTCCATGAGGAATAGTGGAACAA
65 AAGAAGCAGCGAAACAAATCCCTTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACAA
****
32422 AAAGGC
130 GTCTGC
* * * * * * * * *
32428 CTCAATTCAATATTCGCTAAAGAATAGTGGAATGAATCAACATTTCCATATCGGATTTTCCCTTA
1 CTCGATTCAATCTTCCCTAAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
* * * * * *
32493 AGAAGCAACTAAACAAATCTCTTTTTTCTCCAGATTTGTTCTTCCATGAGGAACAATGGAACAAG
66 AGAAGCAGCGAAACAAATCCCTTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACAAG
32558 TCTGC
131 TCTGC
* * *
32563 CTC-ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTAATTTTCCCTCA
1 CTCGATTCAATCTTCCCTAAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
** * * * *
32627 AGAATTAGCGGAACAAATCCCTTTTTTTTCCAGATTTGATATTCCTTGAGGAACAGTGGAACGAG
66 AGAAGCAGCGAAACAAATCCCTTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACAAG
*
32692 TCTTC
131 TCTGC
* * * * * * * *
32697 ATTGATTCAATCTTTCTTGGAAA-AA-AGTGGAATGAATCAACATTTATAGATTTGATTTTCCCA
1 CTCGATTCAATCTTCCCT--AAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCT
* * * * * * * *
32760 CAAGAAGCAACAAAACATATCCCTCTTTTCTCCATATTT-ATTCTTCCATGAGGAATAGTGAAAC
64 CAAGAAGCAGCGAAACAAATCCCTTTTTTTTCCAGATTTGA-TCTTCCATGAGGAACAGTGGAAC
*
32824 AAGTCTGT
128 AAGTCTGC
* * *
32832 CTCGATTCAATCTTCCCTGAAGAACACTGGAATGAATCAACATTTCTAGATCTGATTTTCTCTCA
1 CTCGATTCAATCTTCCCTAAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
* **
32897 AGAAGCAGCGAAACATATCCCTTTTTTTTTTCCAGATTTGATCTTCTTTGAGGAACAGTGGAACA
66 AGAAGCAGCGAAACAAATCCC--TTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACA
32962 AGTCTGC
129 AGTCTGC
* * * * * **
32969 CTTGATTCAATCTTCCCTGAAGAACAGTGGAATCAATCAACATTTCTAGATTTGATTTTCCCTTT
1 CTCGATTCAATCTTCCCTAAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
* * *
33034 AGAAGCAGCGAAACAAATCCCTCTTTTCTCAAGATTTGATCTTCCATGAGGAACAGTGGAACAAG
66 AGAAGCAGCGAAACAAATCCCTTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACAAG
*
33099 TCTAC
131 TCTGC
* * ** * * *
33104 CTCGATTCAATCTTCCCTGAAGAATAATGGAATGAATTGATATTTCCAGATCTGATTTTCCCTCG
1 CTCGATTCAATCTTCCCTAAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
* * * *
33169 AGAAGTAGC-AGAACAGAT-CCTTCTTTTTCTCCATATTTGATCTTCCCTGAGGAACAGTGGAAC
66 AGAAGCAGCGA-AACAAATCCCTT-TTTTT-TCCAGATTTGATCTTCCATGAGGAACAGTGGAAC
33232 AAGTCTGC
128 AAGTCTGC
* * * * * *
33240 CTCGATTCAATCTTCCCTGAAA-AATATTGGAATTAATCAACGTTTCCAAATCTGATTTTCCCTC
1 CTCGATTCAATCTTCCCT-AAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCTC
* ** * * *
33304 AAGAAGCAGCGAAACAAATCCCTCTTTTTT-CAGACATGATCTTCCATAAGGAACAGTGTAAAAA
65 AAGAAGCAGCGAAACAAATCCCTTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACAA
* *
33368 GTATGT
130 GTCTGC
* *
33374 CTCGATTCAATCTTCCCTGAAA-AACAGTGGAATAAATCAA
1 CTCGATTCAATCTTCCCT-AAAGAACAATGGAATGAATCAA
33414 TGTTTCTTAA
Statistics
Matches: 926, Mismatches: 177, Indels: 37
0.81 0.16 0.03
Matches are distributed among these distances:
133 2 0.00
134 188 0.20
135 494 0.53
136 116 0.13
137 125 0.13
138 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (135 bp):
CTCGATTCAATCTTCCCTAAAGAACAATGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
AGAAGCAGCGAAACAAATCCCTTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACAAG
TCTGC
Found at i:32868 original size:404 final size:401
Alignment explanation
Indices: 32162--33413 Score: 1430
Period size: 404 Copynumber: 3.1 Consensus size: 401
32152 ATCGAACTCG
* * *** *
32162 ATTCAATCTTCTCTGAGGAACAACAGAATGAATCAACATTTCCAGATCTAATTTTCCCTCAAGAA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTAATTTTCCCTCAAGAA
* * * * * *
32227 GCAAC-ATAATAGATCCCTATTTTCTCTAGATTTGATATTCCTTAAGGAACAGTGAAACAAGTCT
66 GCAGCGA-AACAAATCCCTATTTTCTCAAGATTTGATATTCCTTGAGGAACAGTGGAACAAGTCT
* * * * * *
32291 GCCTCGATTCGATCTTCCCTAAAGAACAACGAAATGAATCAATATTCATAGATATGATTTTCCCT
130 ACCTCGATTCAATCTTCCCTGAA-AA-AATGGAATGAATCAATATTTATAGATATGATTTTCCCT
* * * * * *
32356 CAAGAAGCAGCGAAACATGTCCCTTTTTTTTCCAGATTTGATATTCCATGAGGAATAGTGGAACA
193 CAAGAAGCAGCAAAACATATCCCTCTTTTCTCCATATTTGATCTTCCATGAGGAATAGTGGAACA
**** * * * * * * *
32421 AAAAGGCCTCAATTCAATATTCGCTAAAGAATAGTGGAATGAATCAACATTTCCATATCGGATTT
258 AGTCTGCCTCGATTCAATCTTCCCTGAAGAATACTGGAATGAATCAACATTTCCAAATCTGATTT
* * * * *
32486 TCCCTTAAGAAGCAACTAAACAAATCTCTTTTTTCTCCAGATTTGTTCTTCCATGAGGAACAATG
323 TCCCTCAAGAAGCAGCGAAACAAATCTCTTTTTT-TCCAGATTTGATCTTCCATGAGGAACAGTG
32551 GAACAAGTCTGCCTC
387 GAACAAGTCTGCCTC
32566 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTAATTTTCCCTCAAGAA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTAATTTTCCCTCAAGAA
** * * * * * *
32631 TTAGCGGAACAAATCCCTTTTTTTTCCAGATTTGATATTCCTTGAGGAACAGTGGAACGAGTCTT
66 GCAGCGAAACAAATCCCTATTTTCTCAAGATTTGATATTCCTTGAGGAACAGTGGAACAAGTCTA
* * * * * * *
32696 CATTGATTCAATCTTTCTTGGAAAAAAGTGGAATGAATCAACATTTATAGATTTGATTTTCCCAC
131 CCTCGATTCAATCTTCCCT-GAAAAAA-TGGAATGAATCAATATTTATAGATATGATTTTCCCTC
* *
32761 AAGAAGCAACAAAACATATCCCTCTTTTCTCCATATTT-ATTCTTCCATGAGGAATAGTGAAACA
194 AAGAAGCAGCAAAACATATCCCTCTTTTCTCCATATTTGA-TCTTCCATGAGGAATAGTGGAACA
* * * *
32825 AGTCTGTCTCGATTCAATCTTCCCTGAAGAACACTGGAATGAATCAACATTTCTAGATCTGATTT
258 AGTCTGCCTCGATTCAATCTTCCCTGAAGAATACTGGAATGAATCAACATTTCCAAATCTGATTT
* * * **
32890 TCTCTCAAGAAGCAGCGAAACATATCCCTTTTTTTTTTCCAGATTTGATCTTCTTTGAGGAACAG
323 TCCCTCAAGAAGCAGCGAAACAAAT--C-TCTTTTTTTCCAGATTTGATCTTCCATGAGGAACAG
*
32955 TGGAACAAGTCTGCCTTG
385 TGGAACAAGTCTGCC-TC
* * * **
32973 ATTCAATCTTCCCTGAAGAACAGTGGAATCAATCAACATTTCTAGATTTGATTTTCCCTTTAGAA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTAATTTTCCCTCAAGAA
* * *
33038 GCAGCGAAACAAATCCCTCTTTTCTCAAGATTTGATCTTCCATGAGGAACAGTGGAACAAGTCTA
66 GCAGCGAAACAAATCCCTATTTTCTCAAGATTTGATATTCCTTGAGGAACAGTGGAACAAGTCTA
** ** *
33103 CCTCGATTCAATCTTCCCTGAAGAATAATGGAATGAATTGATATTTCCAGATCTGATTTTCCCTC
131 CCTCGATTCAATCTTCCCTGAA-AA-AATGGAATGAATCAATATTTATAGATATGATTTTCCCTC
* * * * * * *
33168 GAGAAGTAGCAGAACAGATCCTTCTTTTTCTCCATATTTGATCTTCCCTGAGGAACAGTGGAACA
194 AAGAAGCAGCAAAACATATCCCTC-TTTTCTCCATATTTGATCTTCCATGAGGAATAGTGGAACA
* * * *
33233 AGTCTGCCTCGATTCAATCTTCCCTGAAAAATATTGGAATTAATCAACGTTTCCAAATCTGATTT
258 AGTCTGCCTCGATTCAATCTTCCCTGAAGAATACTGGAATGAATCAACATTTCCAAATCTGATTT
* ** *
33298 TCCCTCAAGAAGCAGCGAAACAAATCCCTCTTTTTT-CAGACATGATCTTCCATAAGGAACAGTG
323 TCCCTCAAGAAGCAGCGAAACAAATCTCT-TTTTTTCCAGATTTGATCTTCCATGAGGAACAGTG
* * * *
33362 TAAAAAGTATGTCTC
387 GAACAAGTCTGCCTC
* *
33377 GATTCAATCTTCCCTGAAAAACAGTGGAATAAATCAA
1 -ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAA
33414 TGTTTCTTAA
Statistics
Matches: 711, Mismatches: 123, Indels: 27
0.83 0.14 0.03
Matches are distributed among these distances:
403 3 0.00
404 283 0.40
405 69 0.10
406 50 0.07
407 188 0.26
408 117 0.16
409 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (401 bp):
ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTAATTTTCCCTCAAGAA
GCAGCGAAACAAATCCCTATTTTCTCAAGATTTGATATTCCTTGAGGAACAGTGGAACAAGTCTA
CCTCGATTCAATCTTCCCTGAAAAAATGGAATGAATCAATATTTATAGATATGATTTTCCCTCAA
GAAGCAGCAAAACATATCCCTCTTTTCTCCATATTTGATCTTCCATGAGGAATAGTGGAACAAGT
CTGCCTCGATTCAATCTTCCCTGAAGAATACTGGAATGAATCAACATTTCCAAATCTGATTTTCC
CTCAAGAAGCAGCGAAACAAATCTCTTTTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAAC
AAGTCTGCCTC
Found at i:35358 original size:18 final size:18
Alignment explanation
Indices: 35335--35407 Score: 67
Period size: 18 Copynumber: 3.9 Consensus size: 18
35325 AGGGATTATC
*
35335 AGTGGTCCTTCAGGACAT
1 AGTGGTCCTTCGGGACAT
* *
35353 AGTGGTTCTTCGGAACAAT
1 AGTGGTCCTTCGGGAC-AT
*
35372 CAATGGTCC-TCTGGGACAT
1 -AGTGGTCCTTC-GGGACAT
*
35391 AGTGGTCATTCGGGACA
1 AGTGGTCCTTCGGGACA
35408 AATATTCATT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
18 25 0.58
19 8 0.19
20 10 0.23
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:45121 original size:21 final size:21
Alignment explanation
Indices: 45097--45136 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
45087 CAATGGGATT
* *
45097 AGGATTAGGAATTGGATTTTC
1 AGGAATAGGAATAGGATTTTC
*
45118 AGGAATAGGAGTAGGATTT
1 AGGAATAGGAATAGGATTT
45137 GGAGGTGGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
AGGAATAGGAATAGGATTTTC
Found at i:52152 original size:2 final size:2
Alignment explanation
Indices: 52145--52192 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
52135 AATGCATTGT
*
52145 TA TA TA TA TA TC TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52186 TA TA TA T
1 TA TA TA T
52193 TATGCCTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:54530 original size:122 final size:124
Alignment explanation
Indices: 54368--54679 Score: 422
Period size: 122 Copynumber: 2.5 Consensus size: 124
54358 TAGTATATCA
*
54368 TCATTTCGGTTGGAGTAATAAATGACTGATTTAAGGCATGAAAGGTCATTTATTCTGA-TGGAAA
1 TCATTTCGATTGGAGTAATAAATGACTGATTTAAGGCATGAAAGGTCATTTATTCTGATTGG-AA
*
54432 AACTATATATTATTG-TTTTCTGAGTCAATATT-GATTTTAAGACGAAATAATGA-ATCTCT
65 AACTATATATT-TTGTTTTTC-GAGTCAATATTAAATTTTAAGACGAAATAATGATATCTCT
* * *
54491 TCATTTCGATTGGAGTAAT-AATGACTGCTTTAAGGCATGAGATGTCA-TTATTCTCGATTGGAA
1 TCATTTCGATTGGAGTAATAAATGACTGATTTAAGGCATGAAAGGTCATTTATTCT-GATTGGAA
* *
54554 AGCTTTATATTTTGTTTTTCGAGTCAATATTAAATTTTAAGACGAAATAATGATATCTCT
65 AACTATATATTTTGTTTTTCGAGTCAATATTAAATTTTAAGACGAAATAATGATATCTCT
* * * *
54614 TTATTTCAATTAGGA-TAATAAATGATTGTTTTAAGGCATGAAAGGTCATTTATTCTGAATTGGA
1 TCATTTCGATT-GGAGTAATAAATGACTGATTTAAGGCATGAAAGGTCATTTATTCTG-ATTGGA
54678 AA
64 AA
54680 TAATTAGATA
Statistics
Matches: 167, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
121 21 0.13
122 63 0.38
123 40 0.24
124 28 0.17
125 15 0.09
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (124 bp):
TCATTTCGATTGGAGTAATAAATGACTGATTTAAGGCATGAAAGGTCATTTATTCTGATTGGAAA
ACTATATATTTTGTTTTTCGAGTCAATATTAAATTTTAAGACGAAATAATGATATCTCT
Found at i:56931 original size:14 final size:14
Alignment explanation
Indices: 56912--56939 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
56902 TACGGTATAG
56912 TTTTTGAAAACATA
1 TTTTTGAAAACATA
56926 TTTTTGAAAACATA
1 TTTTTGAAAACATA
56940 ATATATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
TTTTTGAAAACATA
Found at i:57002 original size:15 final size:15
Alignment explanation
Indices: 56982--57011 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
56972 TATAATATAA
56982 TTTTTGAAAACATAT
1 TTTTTGAAAACATAT
*
56997 TTTTTGAAAATATAT
1 TTTTTGAAAACATAT
57012 GTAAACACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (15 bp):
TTTTTGAAAACATAT
Found at i:59410 original size:11 final size:11
Alignment explanation
Indices: 59394--59426 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
59384 CTTTCAATTC
59394 TTTTATTATTT
1 TTTTATTATTT
59405 TTTTATTATTT
1 TTTTATTATTT
*
59416 TATT-TTATTT
1 TTTTATTATTT
59426 T
1 T
59427 ATTTTATATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTATTATTT
Found at i:59420 original size:5 final size:5
Alignment explanation
Indices: 59399--59433 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
59389 AATTCTTTTA
*
59399 TTATT TTTTT ATTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT -TTATT TTATT TTATT TTATT TTAT
59434 ATCCTTGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:62272 original size:12 final size:10
Alignment explanation
Indices: 62257--62338 Score: 60
Period size: 10 Copynumber: 8.0 Consensus size: 10
62247 AAAAACACAC
62257 AAAAAGAAAGTA
1 AAAAAGAAA--A
62269 AAAAGAGAAAA
1 AAAA-AGAAAA
62280 AAAAAGAGAAA
1 AAAAAGA-AAA
* *
62291 ACATA-AAAA
1 AAAAAGAAAA
*
62300 AAATAGAAAA
1 AAAAAGAAAA
* *
62310 AAATAG-AGA
1 AAAAAGAAAA
62319 AAAAAGAAAA
1 AAAAAGAAAA
*
62329 AAGAAGAAAA
1 AAAAAGAAAA
62339 TAGACAGATT
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
9 14 0.24
10 25 0.42
11 11 0.19
12 4 0.07
13 5 0.08
ACGTcount: A:0.79, C:0.01, G:0.15, T:0.05
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:62285 original size:19 final size:18
Alignment explanation
Indices: 62257--62338 Score: 58
Period size: 19 Copynumber: 4.3 Consensus size: 18
62247 AAAAACACAC
*
62257 AAAAAGAAAGTAAAAAGAG
1 AAAAAAAAAG-AAAAAGAG
* *
62276 AAAAAAAAAGAGAAAACAT
1 AAAAAAAAAGA-AAAAGAG
* *
62295 AAAAAAAATAGAAAAAAAT
1 AAAAAAAA-AGAAAAAGAG
*
62314 AGAGAAAAAAGAAAAA-AG
1 A-AAAAAAAAGAAAAAGAG
62332 AAGAAAA
1 AA-AAAA
62339 TAGACAGATT
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
17 1 0.02
18 6 0.12
19 36 0.69
20 9 0.17
ACGTcount: A:0.79, C:0.01, G:0.15, T:0.05
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAGAG
Found at i:62302 original size:30 final size:28
Alignment explanation
Indices: 62268--62338 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 28
62258 AAAAGAAAGT
62268 AAAAAGAGAAAAAAAAAGAGAAAACATAAA
1 AAAAAGAGAAAAAAAAAGAGAAAA-A-AAA
* * *
62298 AAAAATAGAAAAAAATAGAGAAAAAAGA
1 AAAAAGAGAAAAAAAAAGAGAAAAAAAA
62326 AAAAAGAAGAAAA
1 AAAAAG-AGAAAA
62339 TAGACAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 7 0.19
29 7 0.19
30 22 0.61
ACGTcount: A:0.80, C:0.01, G:0.14, T:0.04
Consensus pattern (28 bp):
AAAAAGAGAAAAAAAAAGAGAAAAAAAA
Found at i:66619 original size:2 final size:2
Alignment explanation
Indices: 66612--66640 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
66602 TATCATTGGA
66612 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
66641 AAATAATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72360 original size:52 final size:53
Alignment explanation
Indices: 72188--72484 Score: 244
Period size: 54 Copynumber: 5.5 Consensus size: 53
72178 GTTTTTTTTG
* * ** **
72188 GAAACTAAGTCTGATTTTCAGAAGTTTCTTGACAATTTTCAAATGACTTTTAAA
1 GAAACTAAGCCTAATTTT-AGGGGTTTCTTGATGATTTTCAAATGACTTTTAAA
* * ** * * * *
72242 GAAACTAAGTCTGATTTTCAGAAGTTTATTGATGTTTTTTAAATGACCTTTCAAA
1 GAAACTAAGCCTAATTTT-AGGGGTTTCTTGATGATTTTCAAATGA-CTTTTAAA
*
72297 GAAACTAAGCCTAATTTTAGGGGTTTCTTGATG-TTTTCAAATGAATTTTAAA
1 GAAACTAAGCCTAATTTTAGGGGTTTCTTGATGATTTTCAAATGACTTTTAAA
* * *
72349 GAAGCTAAGCCTAATTTTTAGGGGTTTCTTGAT--TTTTCAAATGAGTTTT-TA
1 GAAACTAAGCCTAA-TTTTAGGGGTTTCTTGATGATTTTCAAATGACTTTTAAA
* * * *
72400 GAAATTAAGCCTGATTTTCAGGGGGTTCTTGATGATTATCTCCAAA-GAGTTTTTAAAA
1 GAAACTAAGCCTAATTTT-AGGGGTTTCTTGATGATT-T-T-CAAATGA-CTTTT-AAA
*
72458 GGAAGCTAAGCCTAATTTTTAGGGGTT
1 -GAAACTAAGCCTAA-TTTTAGGGGTT
72485 CCTTAACAGC
Statistics
Matches: 203, Mismatches: 27, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
50 4 0.02
51 25 0.12
52 34 0.17
53 30 0.15
54 54 0.27
55 26 0.13
56 8 0.04
58 1 0.00
59 17 0.08
60 4 0.02
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (53 bp):
GAAACTAAGCCTAATTTTAGGGGTTTCTTGATGATTTTCAAATGACTTTTAAA
Found at i:72381 original size:107 final size:105
Alignment explanation
Indices: 72188--72484 Score: 276
Period size: 107 Copynumber: 2.8 Consensus size: 105
72178 GTTTTTTTTG
* * ** * ** * * *
72188 GAAACTAAGTCTGATTTTCAGAAGTTTCTTGACAATTTTCAAATGACTTTTAAAGAAACTAAGTC
1 GAAACTAAGCCTAATTTTCAGGGGGTTCTTGATGATTTTCAAATGAATTTTAAAGAAGCTAAGCC
* * ** *
72253 TGATTTTCAGAAGTTTATTGATGTTTTTTAAATGACCTTTCAAA
66 TAATTTTTAGGGGTTTATTGA--TTTTTCAAATGA-CTTT-AAA
*
72297 GAAACTAAGCCTAATTTT-AGGGGTTTCTTGATG-TTTTCAAATGAATTTTAAAGAAGCTAAGCC
1 GAAACTAAGCCTAATTTTCAGGGGGTTCTTGATGATTTTCAAATGAATTTTAAAGAAGCTAAGCC
* * **
72360 TAATTTTTAGGGGTTTCTTGATTTTTCAAATGAGTTTTTA
66 TAATTTTTAGGGGTTTATTGATTTTTCAAATGACTTTAAA
* * *
72400 GAAATTAAGCCTGATTTTCAGGGGGTTCTTGATGATTATCTCCAAA-GAGTTTTTAAAAGGAAGC
1 GAAACTAAGCCTAATTTTCAGGGGGTTCTTGATGATT-T-T-CAAATGA-ATTTT-AAA-GAAGC
72464 TAAGCCTAATTTTTAGGGGTT
60 TAAGCCTAATTTTTAGGGGTT
72485 CCTTAACAGC
Statistics
Matches: 158, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
103 17 0.11
104 17 0.11
105 13 0.08
106 1 0.01
107 46 0.29
108 19 0.12
109 19 0.12
110 26 0.16
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (105 bp):
GAAACTAAGCCTAATTTTCAGGGGGTTCTTGATGATTTTCAAATGAATTTTAAAGAAGCTAAGCC
TAATTTTTAGGGGTTTATTGATTTTTCAAATGACTTTAAA
Found at i:72430 original size:51 final size:52
Alignment explanation
Indices: 72223--72484 Score: 233
Period size: 52 Copynumber: 4.8 Consensus size: 52
72213 TTCTTGACAA
* * * ** *
72223 TTTTCAAATGACTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTATTGATG
1 TTTTCAAATGAATTTTAAAGAAACTAAGCCTAATTTT-AGGGGTTTCTTGATG
* * *
72276 TTTTTTAAATGACCTTTCAAAGAAACTAAGCCTAATTTTAGGGGTTTCTTGATG
1 -TTTTCAAATGA-ATTTTAAAGAAACTAAGCCTAATTTTAGGGGTTTCTTGATG
*
72330 TTTTCAAATGAATTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGAT-
1 TTTTCAAATGAATTTTAAAGAAACTAAGCCTAA-TTTTAGGGGTTTCTTGATG
* * * * *
72382 TTTTCAAATGAGTTTT-TAGAAATTAAGCCTGATTTTCAGGGGGTTCTTGATG
1 TTTTCAAATGAATTTTAAAGAAACTAAGCCTAATTTT-AGGGGTTTCTTGATG
* *
72434 ATTATCTCCAAA-GAGTTTTTAAAAGGAAGCTAAGCCTAATTTTTAGGGGTT
1 -TT-T-T-CAAATGA-ATTTT-AAA-GAAACTAAGCCTAA-TTTTAGGGGTT
72485 CCTTAACAGC
Statistics
Matches: 172, Mismatches: 23, Indels: 21
0.80 0.11 0.10
Matches are distributed among these distances:
50 4 0.02
51 25 0.15
52 34 0.20
53 30 0.17
54 23 0.13
55 26 0.15
56 8 0.05
58 1 0.01
59 17 0.10
60 4 0.02
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (52 bp):
TTTTCAAATGAATTTTAAAGAAACTAAGCCTAATTTTAGGGGTTTCTTGATG
Found at i:73034 original size:18 final size:18
Alignment explanation
Indices: 72997--73034 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
72987 CCAAGAAAAG
*
72997 AATGAAGACTGCTCTAGC
1 AATGAAGACTGCACTAGC
*
73015 AATGAAGACTGCACTTGC
1 AATGAAGACTGCACTAGC
73033 AA
1 AA
73035 CCAATTCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (18 bp):
AATGAAGACTGCACTAGC
Found at i:73843 original size:139 final size:139
Alignment explanation
Indices: 73593--74131 Score: 839
Period size: 139 Copynumber: 3.9 Consensus size: 139
73583 AGATGAACCA
* * *
73593 ATCAACATTTCAAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAA-GGAGAAGAAGCTCA
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAT-AAGGGAGAAAAAGTTCA
* * * * *
73657 TAATGAGAAGAGCTTGTTCGACCCTAGCTCGATTCATTGTATATGGAGTTGAATCATCAACACCT
65 TAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCGTATATGGAGTTGAATCAGCAACACCT
73722 CACTCGAGGG
130 CACTCGAGGG
*
73732 ATCAAAATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAA-GGAGAAAAAGTTCA
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAT-AAGGGAGAAAAAGTTCA
* *
73796 TAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCGTCGCATATGGAGTTGAATCAGCAACACCT
65 TAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCGTATATGGAGTTGAATCAGCAACACCT
73861 CACTCGAGGG
130 CACTCGAGGG
* *
73871 ATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATAAGGGAGACAAAGTTCAT
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAAGGGAGAAAAAGTTCAT
*
73936 AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCATATATGGAGTTGAATCAGCAACACCTC
66 AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCGTATATGGAGTTGAATCAGCAACACCTC
74001 ACTCGAGGG
131 ACTCGAGGG
* * **
74010 ATCAACATTTCCAATAGAGAGTTCATAATGAGAATAACTCATCCGATAAGGGAGACGAAGTTCAT
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAAGGGAGAAAAAGTTCAT
* * * *
74075 AATGAGAAGAACTTGTTCAACCTTAGCTTGTTTCTATCGTATAAGGAGTTGGATCAG
66 AATGAGAAGAACTTGTTCAACCTTAGCTCGATTC-ATCGTATATGGAGTTGAATCAG
74132 TATCATCGTT
Statistics
Matches: 372, Mismatches: 26, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
138 2 0.01
139 351 0.94
140 19 0.05
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (139 bp):
ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAAGGGAGAAAAAGTTCAT
AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCGTATATGGAGTTGAATCAGCAACACCTC
ACTCGAGGG
Found at i:76754 original size:2 final size:2
Alignment explanation
Indices: 76747--76771 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76737 GGTTACTACA
76747 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
76772 GTTTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76921 original size:4 final size:4
Alignment explanation
Indices: 76903--76951 Score: 64
Period size: 4 Copynumber: 12.2 Consensus size: 4
76893 TTTATATTTA
* *
76903 TATT TATA T-TT TATT TATT TATT TATT TATTT TATT TATT AATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TA-TT TATT TATT TATT TATT
76951 T
1 T
76952 TCATTTGGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 2 0.05
4 33 0.85
5 4 0.10
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:76923 original size:21 final size:21
Alignment explanation
Indices: 76897--76957 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
76887 TCCATTTTTA
76897 TATTTATATTTATATTTTATT
1 TATTTATATTTATATTTTATT
*
76918 TATTTAT-TTATTTATTTTATT
1 TATTTATATT-TATATTTTATT
*
76939 TA-TTA-ATTTAT-TTTCATT
1 TATTTATATTTATATTTTATT
76957 T
1 T
76958 GGTCCAGGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
18 7 0.20
19 2 0.06
20 7 0.20
21 19 0.54
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (21 bp):
TATTTATATTTATATTTTATT
Found at i:76952 original size:17 final size:17
Alignment explanation
Indices: 76897--76957 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
76887 TCCATTTTTA
*
76897 TATTTATATTTA-TATTT
1 TATTT-TATTTATTAATT
*
76914 TA-TTTATTTATTTATT
1 TATTTTATTTATTAATT
76930 TATTTTATTTATTAATT
1 TATTTTATTTATTAATT
76947 TATTTTCATTT
1 TATTTT-ATTT
76958 GGTCCAGGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
15 6 0.16
16 7 0.18
17 21 0.55
18 4 0.11
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (17 bp):
TATTTTATTTATTAATT
Found at i:78737 original size:17 final size:17
Alignment explanation
Indices: 78715--78748 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
78705 TGAAATCGAT
78715 GCCTTCATGATAATTTA
1 GCCTTCATGATAATTTA
* *
78732 GCCTTCGTGATTATTTA
1 GCCTTCATGATAATTTA
78749 TTCTCCGTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.44
Consensus pattern (17 bp):
GCCTTCATGATAATTTA
Found at i:81872 original size:24 final size:24
Alignment explanation
Indices: 81811--81883 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
81801 TTAAGGAGAC
* * *
81811 TCATATGCTGTAAAAGAACAAGCT
1 TCATCTGCTGCAAAAGCACAAGCT
* *
81835 TCATCTTCTACAAAAGCACAAGCT
1 TCATCTGCTGCAAAAGCACAAGCT
81859 TCAT-TGGCTGC-AAAGCACAAGCT
1 TCATCT-GCTGCAAAAGCACAAGCT
81882 TC
1 TC
81884 TATAACTAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
23 15 0.37
24 26 0.63
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (24 bp):
TCATCTGCTGCAAAAGCACAAGCT
Found at i:85945 original size:20 final size:20
Alignment explanation
Indices: 85920--85965 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
85910 TCCATGGATG
*
85920 CACACATAGTGTCGAAAGTA
1 CACACATAGTGCCGAAAGTA
85940 CACACATAGTGCCGAAAGTA
1 CACACATAGTGCCGAAAGTA
85960 CACACA
1 CACACA
85966 GTACTGATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.41, C:0.26, G:0.17, T:0.15
Consensus pattern (20 bp):
CACACATAGTGCCGAAAGTA
Found at i:94771 original size:20 final size:20
Alignment explanation
Indices: 94734--94772 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
94724 AGATTGAGTG
* * *
94734 GATTTTGATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
94754 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
94773 AGTTTAGGAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:94989 original size:20 final size:21
Alignment explanation
Indices: 94944--95004 Score: 88
Period size: 20 Copynumber: 2.9 Consensus size: 21
94934 TTCCCCTGTG
94944 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
94967 GGGGGAATCGGTTCCCT-AAA
1 GGGGGAATCGGTTCCCTCAAA
*
94987 GGGGGAATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
95005 TGCACCAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
20 19 0.53
21 1 0.03
22 3 0.08
23 13 0.36
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:104494 original size:39 final size:37
Alignment explanation
Indices: 104425--104521 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 37
104415 TATGGTATAG
*
104425 TTTTTGAAAACATA-AT-ATATTGTTTTAAAAAACGGA
1 TTTTTGAAAACATATATAATATAGTTTTAAAAAA-GGA
*
104461 -TTTTGAAAACATATATAATATAGTTTTTGAAAAAATGA
1 TTTTTGAAAACATATATAATATAG-TTTT-AAAAAAGGA
*
104499 TTTTTGAAAACGTATATAATATA
1 TTTTTGAAAACATATATAATATA
104522 TATAATCTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
35 13 0.25
36 2 0.04
37 5 0.09
38 6 0.11
39 27 0.51
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.40
Consensus pattern (37 bp):
TTTTTGAAAACATATATAATATAGTTTTAAAAAAGGA
Found at i:104572 original size:21 final size:21
Alignment explanation
Indices: 104534--104573 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
104524 TAATCTTTGA
* *
104534 AAATATAGTATGTTGTTTTTT
1 AAATATAGTATATAGTTTTTT
*
104555 AAATATATTATATAGTTTT
1 AAATATAGTATATAGTTTT
104574 AATACATATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (21 bp):
AAATATAGTATATAGTTTTTT
Found at i:104629 original size:23 final size:23
Alignment explanation
Indices: 104595--104639 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
104585 TTTATGTTCC
* *
104595 ATTTTTATATTTCTTTTTATTTT
1 ATTTTTATATTTATTTTCATTTT
104618 ATTTATTA-ATTTATTTTCATTT
1 ATTT-TTATATTTATTTTCATTT
104640 GGCCCAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (23 bp):
ATTTTTATATTTATTTTCATTTT
Found at i:110968 original size:121 final size:121
Alignment explanation
Indices: 110769--110989 Score: 316
Period size: 121 Copynumber: 1.8 Consensus size: 121
110759 CTTCTACACA
* * * *
110769 TTGAGAAGATCTGGTCGGTGGACGACATTGTTCCTACGTGATGAGGACATATAGTTGTCTTTAGG
1 TTGAGAAGATCTGGTCAGTGGACGAAATTGTTCCTACGTGATGAGGACATATAGTTATCTTCAGG
* ** *
110834 GATAATTTGGAGACAACATGGTTCCTACGTGATGAGGATGAAACTACTCCTTCGCG
66 GATAATTTAGAGACAACATAATTCCTACATGATGAGGATGAAACTACTCCTTCGCG
* ** *
110890 TTGAGGAGATCTGGTCAGTGGACGAAATTGTTCCTACGTGATGAGGATGTTTAGTTATCTTCAGG
1 TTGAGAAGATCTGGTCAGTGGACGAAATTGTTCCTACGTGATGAGGACATATAGTTATCTTCAGG
* *
110955 GGTAATTTAGAGACAATATAATTCCTACATGATGA
66 GATAATTTAGAGACAACATAATTCCTACATGATGA
110990 AAAAGTCTGA
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
121 86 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (121 bp):
TTGAGAAGATCTGGTCAGTGGACGAAATTGTTCCTACGTGATGAGGACATATAGTTATCTTCAGG
GATAATTTAGAGACAACATAATTCCTACATGATGAGGATGAAACTACTCCTTCGCG
Found at i:111118 original size:139 final size:139
Alignment explanation
Indices: 110866--111181 Score: 373
Period size: 139 Copynumber: 2.3 Consensus size: 139
110856 TCCTACGTGA
* * *
110866 TGAGGATGA-AACTACTCCTTCGCGTTGAGGAGATCTGGTCAGTGGACGAAATTGTTCCTACGTG
1 TGAGGATGACAA-TGCTCTTTCGCGTTGAGGAGATCTGGCCAGTGGACGAAATTGTTCCTACGTG
* * * * * * * *
110930 ATGAGGATGTTTAGTTATCTTCAGGGGTAATTTAGAGACAATATAATTCCTACATGATGAAAAAG
65 ATAAGGACGTCTAGTCATCTTCAGGGATAATTTAGAGACAACACAATTCCTACATGATCAAAAAG
110995 TCTGATTGTC
130 TCTGATTGTC
* * * * *
111005 TGAGGATGACAATGCTCTTTCGCATTGAGGAGATTTGGCCGGTGGATGACATTGTTCCTACGTGA
1 TGAGGATGACAATGCTCTTTCGCGTTGAGGAGATCTGGCCAGTGGACGAAATTGTTCCTACGTGA
* * * * **
111070 TAAGGACGTCTAGTCATCTTTAGGGATAATTTGGAGACAACACGATTCCTACGTGATCAGGAAGT
66 TAAGGACGTCTAGTCATCTTCAGGGATAATTTAGAGACAACACAATTCCTACATGATCAAAAAGT
111135 CTGATTGTC
131 CTGATTGTC
* * * * *
111144 TGAGGATAACATTGCCCTTTTGTGTTGAGGAGATCTGG
1 TGAGGATGACAATGCTCTTTCGCGTTGAGGAGATCTGG
111182 TCATAGTTGA
Statistics
Matches: 147, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
139 145 0.99
140 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (139 bp):
TGAGGATGACAATGCTCTTTCGCGTTGAGGAGATCTGGCCAGTGGACGAAATTGTTCCTACGTGA
TAAGGACGTCTAGTCATCTTCAGGGATAATTTAGAGACAACACAATTCCTACATGATCAAAAAGT
CTGATTGTC
Found at i:112187 original size:7 final size:7
Alignment explanation
Indices: 112177--112223 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
112167 TCATTTTCAT
112177 TTTTTTC
1 TTTTTTC
112184 TTTTTTC
1 TTTTTTC
*
112191 -TTTTCC
1 TTTTTTC
112197 TTTTTT-
1 TTTTTTC
*
112203 TCTCTTTC
1 T-TTTTTC
112211 TTTTTTC
1 TTTTTTC
112218 TTTTTT
1 TTTTTT
112224 TTCATTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 6 0.18
7 26 0.79
8 1 0.03
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:112194 original size:21 final size:22
Alignment explanation
Indices: 112156--112231 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 22
112146 TCCTGAACCC
*
112156 TTTTATTTTATTCATTTTCATTT
1 TTTTCTTTTATTC-TTTTCATTT
*
112179 TTTTCTTTT-TTCTTTTCCTTT
1 TTTTCTTTTATTCTTTTCATTT
* *
112200 TTTTCTCTTTCTT-TTTTCTTTT
1 TTTTCT-TTTATTCTTTTCATTT
112222 TTTTCATTTT
1 TTTTC-TTTT
112232 TTAGGTGTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
21 14 0.30
22 22 0.47
23 11 0.23
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTCTTTTATTCTTTTCATTT
Found at i:114838 original size:24 final size:20
Alignment explanation
Indices: 114781--114838 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 20
114771 TTTCCCTTGA
114781 AGTGCATCGATGCATTCTAC
1 AGTGCATCGATGCATTCTAC
**
114801 AGTATATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
114824 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
114839 CTACCCATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 15 0.50
22 1 0.03
23 3 0.10
24 11 0.37
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:117925 original size:15 final size:17
Alignment explanation
Indices: 117905--117937 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
117895 TAACTATCAA
117905 TAAAGAA-T-AAAGAGT
1 TAAAGAATTGAAAGAGT
117920 TAAAGAATTGAAAGAGT
1 TAAAGAATTGAAAGAGT
117937 T
1 T
117938 TTCTATGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (17 bp):
TAAAGAATTGAAAGAGT
Found at i:121671 original size:64 final size:60
Alignment explanation
Indices: 121592--121714 Score: 156
Period size: 64 Copynumber: 2.0 Consensus size: 60
121582 TTTATAGAAT
* * * *
121592 TCTAAGACGACAATAATAAATTATCAATTGAAAATATACAAAATATATTTAAAATTTTCAAATG
1 TCTAAAACGACAATAACAAATTATCAATTAAAAAT-TA-AAAA-A-ATCTAAAATTTTCAAATG
* *
121656 TCTAAAACGATAATAACATATTATCAATTAAAAATTAAAAAAATCTAAAATTTTCAAAT
1 TCTAAAACGACAATAACAAATTATCAATTAAAAATTAAAAAAATCTAAAATTTTCAAAT
121715 AAACGACTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
60 16 0.30
61 1 0.02
62 4 0.08
63 2 0.04
64 30 0.57
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (60 bp):
TCTAAAACGACAATAACAAATTATCAATTAAAAATTAAAAAAATCTAAAATTTTCAAATG
Found at i:127716 original size:25 final size:25
Alignment explanation
Indices: 127682--127751 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
127672 AATAACGCCA
*
127682 ATAAACCAAGACATTGCATCTATAT
1 ATAAACCAAGGCATTGCATCTATAT
127707 ATAAACCAAGGCATTGCATCTATAT
1 ATAAACCAAGGCATTGCATCTATAT
127732 ATAAACCAAGGCATTGCATC
1 ATAAACCAAGGCATTGCATC
127752 AGATAGAGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.26
Consensus pattern (25 bp):
ATAAACCAAGGCATTGCATCTATAT
Done.