genome.fa.s4640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004640.1 Hibiscus syriacus cultivar Beakdansim tig00010390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88878

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9489--9565	23	3.3	23	85	0	109	24	14	45	15	1.83
9827--9892	22	3.0	23	80	4	73	51	3	0	45	1.16
9835--9893	17	3.4	17	85	4	73	52	1	0	45	1.10
11097--11508	81	5.1	81	87	1	565	35	10	21	32	1.88
13038--13128	23	4.0	23	75	0	92	31	20	20	26	1.98
16350--16385	17	2.1	17	94	0	63	16	22	5	55	1.62
23332--23454	62	2.0	62	87	3	176	50	10	7	31	1.64
24817--24866	25	2.0	25	84	7	66	24	10	16	50	1.75
25696--25730	2	17.5	2	100	0	70	51	0	0	48	1.00
39512--39645	35	3.8	35	87	2	169	35	14	11	38	1.84
39505--39655	35	4.2	35	87	1	167	33	15	10	40	1.82
39512--39645	71	1.9	71	82	3	171	35	14	11	38	1.84
39795--39988	66	2.9	66	84	4	248	24	22	13	39	1.91
40044--40350	134	2.3	130	83	5	350	26	30	17	25	1.98
40037--40350	131	2.4	131	82	5	373	26	30	17	25	1.97
43815--43852	19	2.0	19	100	0	76	47	0	0	52	1.00
45206--45237	17	1.9	16	93	6	55	37	0	0	62	0.95
45337--45435	49	2.1	47	88	3	144	40	2	0	57	1.10
45386--45441	22	2.5	22	82	8	69	35	1	0	62	1.06
45394--45442	21	2.3	22	82	10	57	34	2	0	63	1.06
45547--45599	18	3.1	18	73	18	58	43	7	0	49	1.31
46290--46393	37	2.8	37	89	0	145	42	13	12	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46790--46851	15	4.5	13	75	18	54	30	0	1	67	1.00
46791--46851	23	2.6	23	87	7	79	31	0	1	67	1.01
47091--47146	22	2.5	22	80	13	69	30	3	0	66	1.09
47091--47169	23	3.4	21	77	16	59	29	3	0	67	1.08
47112--47181	23	3.1	21	76	21	63	25	2	0	71	1.00
47091--47181	45	2.0	44	81	10	105	28	4	0	67	1.10
47122--47179	28	2.1	27	81	9	64	27	3	0	68	1.05
48288--48324	4	9.0	4	94	5	65	24	0	0	75	0.80
50700--50745	21	2.2	21	100	0	92	39	4	8	47	1.54
51459--51541	21	3.9	20	78	12	76	77	8	13	1	1.05
51483--51542	10	5.6	10	74	20	50	78	6	15	0	0.95
51483--51521	11	3.5	11	86	13	53	82	7	10	0	0.86
51493--51522	12	2.5	12	100	0	60	86	6	6	0	0.70
51471--51530	12	4.9	12	72	11	50	83	6	8	1	0.88
51469--51523	22	2.5	23	82	5	69	80	9	9	1	0.99
52131--52185	22	2.5	22	93	0	92	34	27	12	25	1.92
53148--54423	106	12.0	106	93	0	2016	34	25	18	21	1.96
55174--55277	37	2.8	37	85	0	127	41	13	12	32	1.82
55660--55721	23	2.6	23	82	10	63	29	1	1	67	1.09
55950--56000	21	2.5	20	81	9	57	33	3	0	62	1.13
55972--56040	22	3.2	22	76	13	72	26	1	0	72	0.93
55975--56039	28	2.3	28	76	12	71	27	1	0	70	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56123--56178	20	2.9	19	75	21	62	25	5	1	67	1.21
56885--56941	24	2.4	24	90	0	96	24	22	24	28	2.00
58514--58873	180	2.0	180	99	0	711	34	15	15	33	1.90
58953--59101	74	2.0	74	100	0	298	46	13	13	26	1.80
59219--59274	27	2.1	27	83	12	71	39	1	5	53	1.34
60009--60043	17	2.1	17	100	0	70	37	11	5	45	1.64
60296--60362	7	9.7	7	71	20	52	26	0	1	71	0.94
60294--60359	15	4.1	15	81	16	62	25	0	1	72	0.93
60302--60361	20	3.0	20	75	13	61	25	0	1	73	0.93
62870--63220	105	3.3	106	88	2	537	36	17	9	36	1.83
63174--63252	32	2.5	31	87	8	113	36	13	8	40	1.76
66663--66736	29	2.5	29	82	2	85	28	22	6	41	1.79
68142--68255	7	17.3	6	70	26	56	77	3	17	1	1.00
68148--68255	17	6.2	16	75	15	99	77	2	17	1	0.97
68148--68254	29	3.7	29	75	17	89	77	2	17	1	0.98
68142--68255	53	2.2	52	83	12	135	77	3	17	1	1.00
68147--68241	36	2.5	38	83	6	122	77	3	16	2	0.99
69791--69865	22	3.3	23	83	12	84	56	5	0	38	1.22
69818--69865	22	2.2	22	96	0	87	56	4	0	39	1.19
71765--71791	2	13.5	2	100	0	54	51	0	0	48	1.00
73541--73951	194	2.1	193	81	4	461	36	12	12	38	1.80
74575--74614	21	2.0	20	85	5	53	27	7	2	62	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74730--74818	44	2.0	44	93	0	151	33	15	21	29	1.94
76650--77076	167	2.5	168	75	7	418	32	17	12	37	1.87
76898--77092	102	1.9	101	84	7	261	34	18	11	35	1.87
77406--77528	61	2.0	61	87	0	174	39	24	9	26	1.86
77414--77556	61	2.3	60	80	4	160	37	24	11	26	1.90
81852--81886	15	2.3	15	100	0	70	37	20	14	28	1.91
82656--82752	50	1.9	50	91	0	158	41	14	21	22	1.89
84019--84096	36	2.2	37	79	6	88	20	8	16	53	1.69
87783--88177	182	2.2	182	86	1	551	41	12	15	29	1.85

Tables:   1

The End!