genome.fa.s4641.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004641.1 Hibiscus syriacus cultivar Beakdansim tig00010395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114373

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7884--7939	23	2.4	24	80	17	64	46	1	14	37	1.55
8142--8176	18	1.9	18	94	0	61	17	20	34	28	1.95
8162--8209	23	2.0	23	84	8	60	22	16	25	35	1.95
13478--13530	19	2.8	19	75	13	56	49	1	18	30	1.59
13481--13567	37	2.4	37	82	3	95	44	5	19	29	1.74
13517--13582	19	3.5	19	77	4	71	42	9	21	27	1.83
13510--13590	37	2.2	37	95	0	144	39	9	19	30	1.84
13638--13682	13	3.6	12	82	8	54	53	0	26	20	1.46
13709--13746	14	2.7	14	95	0	67	36	5	23	34	1.78
14994--15430	127	3.5	126	82	2	502	28	16	17	37	1.92
20661--20696	17	2.3	15	90	9	54	38	0	0	61	0.96
20739--20787	13	3.2	16	75	19	59	26	2	0	71	0.97
20738--20800	29	2.2	29	80	5	74	26	1	0	71	0.95
20734--20802	30	2.3	29	76	11	77	27	1	0	71	0.95
20799--20844	13	3.5	13	77	16	51	67	0	0	32	0.91
22406--22487	29	2.8	29	94	1	137	32	14	9	42	1.79
23769--23798	15	2.0	15	93	0	51	56	23	0	20	1.42
27904--27942	19	2.0	20	95	5	71	17	20	25	35	1.95
27904--27945	11	4.1	11	82	17	63	19	19	26	35	1.95
27963--28044	13	6.3	13	72	25	59	18	45	23	13	1.84
27962--28038	17	4.4	17	90	3	118	18	46	23	11	1.81
28074--28141	29	2.3	29	85	5	93	29	5	23	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28834--28902	24	2.9	24	73	0	66	24	11	18	44	1.83
35135--35173	19	2.0	20	95	5	71	17	20	25	35	1.95
35135--35176	11	4.1	11	82	17	63	19	19	26	35	1.95
35193--35269	17	4.4	18	90	3	122	18	48	22	11	1.80
35246--35275	13	2.3	13	100	0	60	16	46	23	13	1.82
35305--35373	29	2.3	30	78	7	79	30	5	24	39	1.79
36076--36144	24	2.9	24	73	0	66	24	11	18	44	1.83
42400--42431	2	16.0	2	100	0	64	50	0	0	50	1.00
44316--44359	17	2.5	17	85	10	54	65	2	4	27	1.23
44370--44745	203	1.8	206	91	1	632	45	11	14	28	1.80
46568--46616	18	2.6	19	83	9	64	51	2	0	46	1.12
46682--46721	2	19.5	2	89	5	62	52	0	2	45	1.14
51211--51264	23	2.3	23	80	0	63	35	27	18	18	1.94
56739--56779	20	2.0	20	95	0	73	14	29	39	17	1.89
58786--58825	15	2.6	15	84	4	53	17	7	5	70	1.30
64047--64114	35	1.9	35	93	0	118	55	14	5	23	1.61
64160--64230	35	2.0	35	91	0	115	52	14	8	25	1.69
64047--64283	116	2.0	116	95	0	429	44	14	6	33	1.72
70730--70763	2	17.0	2	100	0	68	50	0	0	50	1.00
71411--71448	17	2.2	18	86	13	53	31	0	0	68	0.90
72916--72969	27	2.0	27	100	0	108	3	7	25	62	1.38
73009--73100	31	3.0	31	93	4	152	33	6	16	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73165--73231	19	3.5	19	84	8	73	38	8	13	38	1.76
73337--73378	21	2.0	21	95	0	75	23	21	28	26	1.99
73407--73446	20	1.9	21	85	10	55	37	37	10	15	1.80
73662--73731	34	2.1	32	86	5	95	31	14	31	22	1.94
74591--74638	19	2.5	20	82	3	62	52	6	12	29	1.63
75136--75174	16	2.4	16	91	0	69	23	23	20	33	1.97
77372--77413	20	2.2	19	86	4	57	42	7	0	50	1.30
82328--82369	22	1.9	21	85	9	57	64	4	2	28	1.26
90354--90438	31	2.7	32	85	5	102	32	21	14	31	1.93
100776--100809	14	2.4	14	100	0	68	47	11	29	11	1.76
103162--103319	60	2.6	60	76	4	158	41	7	18	32	1.79
109481--109653	58	2.9	57	72	12	145	40	6	19	32	1.78

Tables:   1

The End!