genome.fa.s4642.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004642.1 Hibiscus syriacus cultivar Beakdansim tig00010398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142721

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8009--8043	16	2.3	15	90	5	52	20	0	0	80	0.72
8713--8818	44	2.4	44	90	0	167	38	10	23	27	1.87
9161--9191	11	2.8	11	100	0	62	32	0	0	67	0.91
10881--10917	13	2.8	13	91	0	56	2	18	2	75	1.04
23929--23974	5	9.2	5	100	0	92	80	0	0	19	0.71
29630--29787	78	2.0	78	90	0	244	45	9	19	25	1.80
33271--33344	20	3.7	20	78	12	71	27	13	28	31	1.94
33271--33324	21	2.6	21	91	2	83	25	14	27	31	1.95
33109--33338	99	2.3	98	82	3	300	27	12	25	34	1.92
34077--34122	24	2.0	22	87	8	65	56	0	0	43	0.99
34084--34131	24	2.0	24	84	8	62	56	0	2	41	1.11
34563--34664	44	2.3	44	86	3	143	13	23	11	50	1.74
35339--35369	2	15.5	2	100	0	62	48	0	0	51	1.00
35299--35403	51	2.1	51	82	10	126	45	3	6	43	1.48
35353--35491	38	3.6	38	79	10	124	43	4	7	45	1.51
35444--35468	11	2.3	11	100	0	50	40	8	8	44	1.63
35589--35641	6	8.0	7	86	12	53	37	1	0	60	1.08
35610--35671	3	21.3	3	77	12	67	32	0	3	64	1.09
36993--37025	16	2.1	16	88	11	50	15	3	6	75	1.11
37145--37169	3	8.3	3	100	0	50	32	0	0	68	0.90
38868--38912	19	2.4	19	92	3	74	11	13	8	66	1.44
42258--43076	165	5.0	165	94	1	1426	29	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43843--43878	2	18.5	2	94	5	65	50	0	0	50	1.00
43864--43958	36	2.6	38	81	9	101	42	4	8	45	1.54
43950--43974	11	2.3	11	100	0	50	40	8	8	44	1.63
43864--43994	36	3.6	36	78	11	99	42	4	6	45	1.51
43807--44073	133	2.1	128	79	9	281	42	3	6	47	1.47
44107--44169	3	21.3	3	80	9	76	31	0	3	65	1.09
44107--44178	6	10.9	7	76	18	50	30	1	2	65	1.15
44123--44186	33	1.9	33	84	6	85	28	3	3	65	1.23
45489--45521	16	2.1	16	88	11	50	15	3	6	75	1.11
45641--45672	3	10.7	3	100	0	64	31	0	0	68	0.90
46392--46439	19	2.5	19	96	0	87	52	2	35	10	1.48
47475--47555	26	3.1	26	96	3	146	24	7	0	67	1.16
48221--48267	18	2.6	18	100	0	94	25	14	36	23	1.93
51615--51707	14	6.6	14	75	15	84	43	3	2	51	1.29
51651--52361	8	94.8	8	71	19	412	40	3	6	50	1.44
51667--52280	37	16.7	37	81	13	584	40	3	6	50	1.45
51774--52362	84	7.2	82	78	13	460	40	3	6	49	1.45
52267--52347	31	2.7	31	90	5	132	41	2	4	50	1.37
52284--52372	14	6.1	14	75	6	52	42	3	3	50	1.35
52152--52407	115	2.2	113	87	8	358	40	3	6	49	1.45
54583--54612	2	15.0	2	100	0	60	50	0	0	50	1.00
56124--56175	20	2.6	20	100	0	104	34	23	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58926--58981	20	2.8	20	78	10	62	33	30	7	28	1.84
59329--59367	20	2.0	20	84	0	51	30	23	10	35	1.88
65879--65906	6	4.7	6	100	0	56	35	14	17	32	1.90
76512--76561	16	3.1	16	88	0	64	44	20	2	34	1.63
78406--78474	21	3.3	21	89	0	111	26	24	21	27	1.99
79025--79085	22	2.8	21	82	9	68	22	22	21	32	1.98
81967--82006	2	20.0	2	94	0	71	50	2	0	47	1.14
89548--89586	20	1.9	21	94	5	71	15	15	28	41	1.87
90579--90617	17	2.4	16	83	8	53	56	2	7	33	1.41
91656--91814	3	53.7	3	83	7	209	35	1	0	62	1.08
92202--92242	14	2.8	15	82	14	50	73	4	17	4	1.19
104419--104499	1	81.0	1	75	0	63	86	0	12	1	0.63
104416--104501	16	5.2	16	85	14	106	84	0	13	1	0.67
104416--104501	32	2.6	33	84	15	124	84	0	13	1	0.67
105614--106008	102	3.9	102	97	1	722	24	14	23	37	1.92
105614--106008	52	7.7	51	97	0	720	24	14	23	37	1.92
106643--107204	113	5.0	113	92	1	905	37	14	19	28	1.91
106643--107204	223	2.5	225	91	2	894	37	14	19	28	1.91
107501--107690	3	62.7	3	85	4	256	35	1	1	61	1.12
113228--113300	29	2.6	27	72	19	69	39	8	0	52	1.32
113256--113359	31	3.4	29	76	7	91	40	6	0	52	1.28
113380--113497	29	4.2	29	80	11	104	51	0	9	38	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113415--113473	24	2.5	23	86	13	84	55	0	6	37	1.26
113392--113497	53	2.0	54	87	5	153	50	0	8	39	1.39
114047--114274	41	5.4	43	70	16	117	30	15	18	35	1.93
114141--114357	42	5.2	41	76	5	157	29	16	17	35	1.93
114141--114308	83	2.0	83	84	2	221	29	16	18	36	1.92
118470--118649	43	4.2	43	86	1	254	24	21	21	33	1.97
118476--118661	85	2.2	85	85	3	257	26	19	19	33	1.96
118468--118682	43	5.0	44	83	2	118	26	19	19	35	1.95
118470--118723	128	2.0	129	81	2	296	26	20	18	34	1.95
118494--118723	85	2.7	85	82	2	210	26	20	18	35	1.95
120799--120838	21	1.9	22	90	10	66	12	10	40	37	1.77
121024--121085	20	3.3	20	68	25	62	25	20	25	27	1.99
127434--127493	30	2.0	30	83	6	77	33	1	23	41	1.64
132861--132978	54	2.2	54	85	0	155	29	16	15	38	1.89
135526--135607	28	3.0	28	78	10	98	57	0	6	36	1.24
135843--136475	318	2.0	318	89	1	982	40	10	14	34	1.81
136742--136780	21	1.9	21	89	5	62	64	2	2	30	1.21
138269--138342	39	2.0	36	86	7	103	28	32	20	18	1.96
138269--138342	18	3.9	18	86	10	103	28	32	20	18	1.96
141995--142029	17	2.1	17	94	0	61	37	14	0	48	1.44

Tables:   1

The End!