genome.fa.s4643.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004643.1 Hibiscus syriacus cultivar Beakdansim tig00010405_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120006

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6611--6637	10	2.7	10	100	0	54	25	0	0	74	0.83
9179--9241	31	2.0	31	84	0	81	26	11	7	53	1.63
9381--9416	18	2.0	18	88	0	54	50	0	0	50	1.00
14161--14198	18	2.1	18	100	0	76	39	13	21	26	1.89
15306--15368	21	3.0	21	75	9	65	30	23	19	26	1.98
21843--21899	21	2.7	21	86	0	78	29	24	21	24	1.99
23617--23655	20	1.9	21	89	5	62	28	20	17	33	1.96
24962--25005	2	22.5	2	90	4	72	54	0	0	45	0.99
27836--27922	44	2.0	44	100	0	174	25	36	1	36	1.64
32022--32129	3	36.7	3	84	14	145	33	0	0	66	0.92
32574--32602	15	1.9	15	100	0	58	62	31	6	0	1.22
44850--44890	13	2.9	14	80	20	57	75	0	12	12	1.05
44850--44891	15	2.9	15	83	16	61	76	0	11	11	1.03
44850--44895	16	3.1	16	87	12	71	73	0	13	13	1.09
46595--46937	122	2.8	121	86	5	462	39	14	20	25	1.90
47125--47229	3	35.7	3	83	14	139	32	0	0	67	0.91
53052--53155	50	2.1	50	85	5	131	19	30	25	25	1.98
53273--53314	10	4.2	10	85	11	59	30	30	0	38	1.58
53606--53655	15	3.3	15	85	0	73	32	18	36	14	1.90
53628--53673	21	2.2	21	84	0	56	36	15	32	15	1.88
56049--56169	50	2.4	50	76	13	120	24	25	34	14	1.94
56065--56169	50	2.1	50	83	0	129	24	26	34	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57216--57256	22	1.9	21	90	5	64	24	0	4	70	1.06
57922--57958	19	1.9	19	100	0	74	40	10	0	48	1.38
66991--67074	42	2.0	41	90	2	132	44	10	16	28	1.81
69017--69075	25	2.3	26	83	11	70	74	8	3	13	1.17
69020--69090	18	3.8	18	76	10	70	76	5	4	14	1.13
69074--69144	10	6.7	10	78	15	72	81	4	2	11	0.93
69074--69124	11	4.8	11	83	11	63	84	1	3	9	0.83
69075--69144	12	6.6	10	81	16	70	81	4	2	11	0.94
69090--69137	19	2.4	19	93	6	78	83	4	2	10	0.87
69023--69144	22	5.7	22	74	14	80	77	5	3	13	1.06
69173--69248	32	2.4	32	93	2	127	40	25	3	30	1.73
69268--69330	31	2.0	31	87	0	90	46	17	3	33	1.64
69186--69402	82	2.6	83	85	4	276	50	17	5	27	1.67
69812--69842	2	15.5	2	100	0	62	51	0	0	48	1.00
73516--73549	17	2.0	17	88	0	50	35	5	8	50	1.58
73601--73677	14	5.6	14	73	11	79	25	19	28	25	1.99
73600--73677	27	2.9	27	98	0	147	26	19	28	25	1.99
73615--73664	13	3.8	13	76	5	55	30	18	24	28	1.97
77804--77870	19	3.5	19	91	0	107	32	17	28	20	1.96
78636--78695	18	3.2	18	75	9	57	21	18	30	30	1.97
84167--84218	19	2.7	19	100	0	104	26	17	34	21	1.95
86356--86389	17	2.0	17	100	0	68	35	11	5	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86389--86434	16	2.9	15	93	6	74	32	19	21	26	1.97
87620--87669	17	3.3	15	81	16	59	74	8	0	18	1.06
88819--88867	19	2.6	19	84	12	66	40	4	6	48	1.47
88851--89010	2	82.0	2	78	14	156	44	2	3	50	1.31
88987--89050	8	8.5	8	68	25	50	40	7	3	48	1.48
88997--89050	21	2.6	21	82	11	67	40	7	3	48	1.49
89119--89180	32	2.0	31	90	3	97	37	1	9	51	1.45
89125--89183	11	5.5	11	80	11	77	35	1	8	54	1.41
89138--89183	20	2.3	19	82	10	56	34	2	8	54	1.43
89947--89988	21	2.0	22	85	4	59	16	7	16	59	1.58
91629--91716	45	1.9	46	88	2	133	29	23	18	28	1.98
97184--97244	22	2.9	21	79	11	63	31	26	18	24	1.97
97203--97274	21	3.3	21	72	5	63	27	23	23	25	2.00
100024--100111	45	1.9	46	90	2	142	28	25	18	28	1.98
100143--100181	19	2.1	19	85	0	51	23	25	23	28	1.99
101657--101717	13	4.8	13	72	13	56	60	16	9	13	1.58
101996--102110	14	9.4	14	69	27	100	57	12	13	16	1.65
102006--102101	10	8.4	10	75	24	84	56	12	14	16	1.68
101996--102128	24	5.5	24	92	1	212	56	13	13	16	1.68
103577--103640	29	2.2	30	82	2	76	35	4	23	35	1.76
110764--110842	39	2.0	39	82	4	97	20	27	24	27	1.99
111385--111885	2	256.0	2	64	21	138	47	3	4	45	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111402--111881	37	13.4	34	67	19	123	47	3	4	45	1.40
111507--111655	13	12.3	13	64	23	58	48	2	3	45	1.33
111552--111684	61	2.2	61	85	9	182	47	2	4	45	1.35
111823--111881	11	5.5	11	72	9	50	44	0	6	49	1.29
111613--111880	137	2.0	136	82	7	328	46	3	4	45	1.41

Tables:   1

The End!