genome.fa.s4644.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004644.1 Hibiscus syriacus cultivar Beakdansim tig00010407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125940

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4628--4664	19	1.9	19	88	0	56	64	0	18	16	1.29
12296--12337	20	2.2	19	86	4	57	33	19	14	33	1.91
18091--18440	179	2.0	178	92	2	585	39	5	4	50	1.47
20222--20253	14	2.1	16	88	11	50	15	15	18	50	1.79
25091--25766	261	2.6	261	88	0	994	37	15	18	27	1.92
26062--26174	42	2.7	42	95	0	199	15	19	17	46	1.84
26352--26408	25	2.3	26	85	11	75	47	0	0	52	1.00
26369--26431	16	4.1	16	74	10	60	50	1	0	47	1.10
26489--26565	11	6.8	12	72	21	60	49	1	0	49	1.09
26502--26565	23	2.7	23	85	4	74	50	1	0	48	1.10
26797--26831	14	2.5	14	90	0	52	31	20	14	34	1.92
26839--26905	15	4.5	15	81	3	73	34	16	7	41	1.76
26839--26911	30	2.5	29	90	2	119	31	17	6	43	1.75
30066--30101	2	18.5	2	94	5	65	50	0	0	50	1.00
29888--30174	90	3.1	91	77	18	272	44	3	7	44	1.50
30029--30136	56	1.9	57	90	5	175	47	3	6	42	1.47
30083--30190	38	2.8	40	83	12	120	45	2	8	43	1.48
30150--30215	28	2.4	28	76	5	80	42	0	7	50	1.31
30191--30275	38	2.3	37	80	11	102	45	1	2	50	1.22
30190--30328	39	3.7	38	72	12	115	46	1	3	48	1.28
30219--30299	41	2.0	39	83	4	99	48	2	1	48	1.23
30347--30409	3	20.3	3	78	12	65	30	1	1	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30329--30416	13	6.8	13	78	10	92	30	3	1	64	1.17
30339--30416	37	2.1	37	85	4	104	29	3	1	65	1.18
30329--30425	6	14.7	7	72	18	66	30	3	1	64	1.15
31663--31706	11	4.1	11	82	11	56	34	0	0	65	0.93
31651--31699	21	2.4	21	90	6	75	30	2	0	67	1.02
33457--33501	19	2.4	19	92	3	74	11	13	8	66	1.44
36904--37657	84	9.2	81	78	7	731	30	24	20	24	1.99
36904--37720	165	5.0	164	85	4	1031	30	24	20	24	1.99
38357--38612	38	6.4	37	73	20	126	45	3	6	44	1.47
38435--38461	2	13.5	2	100	0	54	48	0	0	51	1.00
38394--38497	47	2.2	47	85	11	142	47	3	6	42	1.48
38375--38578	38	5.1	39	75	20	174	43	4	7	44	1.53
38537--38561	11	2.3	11	100	0	50	40	8	8	44	1.63
38561--38697	39	3.6	39	70	9	113	47	1	3	47	1.28
38708--38771	3	20.3	3	76	20	60	31	1	1	65	1.11
38708--38772	21	3.0	20	79	18	76	30	1	1	66	1.10
38698--38771	26	2.8	24	79	18	76	32	1	1	64	1.10
38708--38778	10	6.7	10	77	15	63	29	2	1	66	1.15
38710--38787	30	2.7	29	82	11	81	29	2	1	66	1.13
40025--40068	21	2.0	22	87	12	65	36	0	0	63	0.95
40025--40068	11	4.1	11	88	11	65	36	0	0	63	0.95
47596--47711	33	3.6	33	93	4	193	50	1	6	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47638--47694	11	5.2	11	72	16	55	56	1	3	38	1.27
48078--48160	42	2.0	42	82	0	103	40	9	13	36	1.77
56373--56473	40	2.5	40	98	0	193	21	16	28	32	1.96
59389--59535	75	2.0	74	82	8	181	31	2	9	57	1.42
62962--63010	24	2.0	24	88	4	71	36	4	10	48	1.56
71001--71052	12	4.5	11	79	13	52	32	3	0	63	1.12
70983--71022	16	2.4	17	84	16	57	27	5	0	67	1.11
71010--71084	26	3.2	24	75	18	68	33	2	1	62	1.17
71034--71089	24	2.4	23	79	8	60	35	1	1	60	1.17
72365--72404	20	2.1	19	90	4	62	10	0	5	85	0.75
75020--75052	16	2.1	16	100	0	66	39	24	12	24	1.89
76435--76635	72	2.7	74	85	4	255	27	19	18	34	1.95
80569--80645	22	3.5	22	80	0	82	36	14	11	37	1.82
81582--81969	47	8.3	47	93	1	629	26	21	18	33	1.97
81582--81969	93	4.1	93	92	2	634	26	21	18	33	1.97
82091--82147	3	18.3	3	75	7	51	43	0	0	56	0.99
83525--83583	26	2.4	24	83	11	66	28	3	1	66	1.18
86858--87757	102	9.0	102	86	5	1194	39	10	10	39	1.74
86860--87757	200	4.5	201	87	4	1171	39	10	10	39	1.74
86858--87710	302	2.8	303	88	3	1200	38	10	10	40	1.74
88441--88508	33	2.1	33	97	0	127	26	11	0	61	1.30
90492--90516	11	2.3	11	100	0	50	52	20	16	12	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92275--92352	26	3.3	25	76	15	69	64	2	3	29	1.25
92296--92352	26	2.2	26	84	3	71	63	3	5	28	1.33
98375--98405	16	1.9	16	93	0	53	54	3	3	38	1.32
99801--99850	26	2.0	26	92	4	84	14	18	34	34	1.90
99887--99940	3	18.0	3	84	7	74	64	0	0	35	0.94
99902--99948	24	2.0	24	95	0	85	70	2	0	27	0.99
100307--100864	123	4.6	123	94	1	980	27	18	14	39	1.90
100307--100864	243	2.3	244	94	1	976	27	18	14	39	1.90
100793--101212	113	3.8	111	84	3	515	28	18	13	39	1.89
100793--101201	223	1.8	224	87	4	610	28	18	13	39	1.89
111630--111660	16	1.9	16	93	0	53	54	3	3	38	1.32
113068--113117	26	2.0	26	92	4	84	14	18	34	34	1.90
113154--113204	3	17.0	3	91	0	84	62	0	0	37	0.95
118648--118691	20	2.2	20	84	8	54	47	2	4	45	1.35
121902--121965	23	2.8	23	90	0	101	46	18	4	29	1.69

Tables:   1

The End!