genome.fa.s4645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004645.1 Hibiscus syriacus cultivar Beakdansim tig00010415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74655

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978--1036	19	3.4	19	73	22	74	45	18	22	13	1.84
979--1078	33	3.0	33	89	2	148	41	19	21	19	1.91
1231--1266	14	2.6	14	95	0	63	44	25	0	30	1.54
2599--2665	21	3.2	21	70	4	55	20	20	34	23	1.97
2638--2717	42	1.9	42	84	0	106	23	16	37	22	1.93
2936--3116	95	2.0	89	88	10	271	46	18	12	22	1.82
4811--4866	14	3.6	14	74	21	58	39	25	25	10	1.87
4795--4885	33	2.7	33	94	1	155	40	24	24	10	1.87
4764--4907	19	8.1	19	71	20	105	43	20	24	12	1.86
5459--5592	20	6.7	20	84	5	135	25	18	23	32	1.97
5465--5613	81	1.8	81	82	2	192	24	18	22	34	1.96
5581--5632	20	2.5	21	84	3	70	17	23	19	40	1.91
9613--9663	25	2.0	26	85	7	70	13	7	9	68	1.38
11044--11093	23	2.2	23	85	0	64	38	4	22	36	1.73
14221--14272	18	2.9	18	97	0	95	15	11	40	32	1.83
15550--15578	15	1.9	15	100	0	58	27	6	37	27	1.82
15869--16836	201	4.8	201	88	1	1345	32	15	14	37	1.88
17285--17332	19	2.6	19	90	3	71	54	12	2	31	1.49
18819--18857	18	2.2	18	95	0	69	7	35	0	56	1.28
21287--21764	182	2.6	182	90	2	762	26	16	15	42	1.87
23625--23674	26	1.9	26	88	8	75	42	2	0	56	1.11
23680--23768	23	4.0	22	74	15	67	30	1	3	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23680--23735	21	2.6	22	77	11	62	28	1	3	66	1.19
23704--23770	8	8.5	8	73	11	50	26	0	2	70	1.02
24945--24969	9	2.8	9	100	0	50	0	36	0	64	0.94
27234--27427	21	9.2	21	74	16	170	20	21	23	35	1.96
27240--27427	42	4.5	42	96	0	331	20	20	23	35	1.96
27507--27562	10	5.2	12	89	6	61	44	44	10	0	1.38
27527--27564	10	3.8	10	100	0	76	47	42	10	0	1.38
27515--27567	5	10.2	5	85	2	61	43	43	13	0	1.43
28198--28326	21	6.2	21	84	8	174	30	26	20	22	1.99
28170--28314	62	2.3	64	88	5	208	32	23	21	22	1.98
28327--28374	21	2.3	21	96	0	87	20	22	27	29	1.99
35499--35557	25	2.4	25	100	0	118	37	13	20	28	1.91
38372--38421	25	2.0	25	88	0	73	56	4	2	38	1.30
40886--40953	23	3.0	22	72	10	57	55	25	0	19	1.43
42306--42338	12	2.6	13	90	4	50	45	6	12	36	1.66
42819--42876	23	2.7	21	70	17	55	36	15	18	29	1.92
47215--47256	18	2.3	18	80	8	50	7	28	7	57	1.52
50611--50709	50	2.0	50	87	0	144	34	20	13	32	1.91
52065--52113	21	2.3	20	83	10	62	42	2	10	44	1.49
52060--52218	22	7.1	24	64	25	71	47	3	8	40	1.51
52159--52219	22	2.8	22	97	0	113	42	3	8	45	1.50
52158--52229	22	3.3	22	90	0	90	45	2	6	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52202--52256	29	2.0	29	89	7	87	47	0	5	47	1.25
52204--52270	29	2.3	29	80	10	75	44	1	5	47	1.36
52210--52264	27	2.0	28	82	13	69	45	1	7	45	1.41
52265--52325	12	5.1	11	77	15	50	32	0	3	63	1.10
52262--52325	19	3.4	19	78	10	78	34	0	3	62	1.11
52275--52334	12	5.1	12	75	20	56	36	0	1	61	1.06
52262--52335	31	2.3	31	81	11	87	35	0	2	62	1.10
55076--55429	177	2.0	177	96	0	645	34	6	20	38	1.79
55509--55594	25	3.3	25	66	28	70	40	3	20	34	1.70
55512--55627	54	2.1	54	100	0	232	43	3	19	33	1.68
55890--55979	21	4.3	21	87	5	128	30	21	23	25	1.99
61125--61478	177	2.0	177	97	0	663	33	7	20	38	1.80
61590--61616	2	13.5	2	100	0	54	48	0	0	51	1.00
61886--61963	21	3.7	21	83	6	104	28	16	29	25	1.97
65816--65858	21	2.0	21	90	0	68	32	34	13	18	1.90
67394--67443	10	4.8	10	87	7	73	0	16	0	84	0.63
67395--67443	11	4.4	11	87	5	71	0	14	0	85	0.59
67395--67443	21	2.3	21	92	3	80	0	14	0	85	0.59
67962--68000	3	12.7	3	94	5	69	33	0	0	66	0.92
68271--68323	9	5.7	9	80	12	54	7	1	5	84	0.82
68271--68324	10	5.2	10	78	8	63	7	1	5	85	0.81
68262--68332	14	5.2	13	77	14	54	8	4	4	83	0.91

Tables:   1

The End!