genome.fa.s4647.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004647.1 Hibiscus syriacus cultivar Beakdansim tig00010417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94906

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6419--6503	44	2.0	43	88	2	125	36	10	11	41	1.76
6824--7657	116	7.2	116	82	4	911	41	16	20	22	1.90
7757--8067	153	2.0	153	91	0	496	38	13	25	21	1.91
9851--9973	29	4.2	30	82	12	139	23	17	13	45	1.84
9846--9973	59	2.2	58	84	6	170	25	17	12	44	1.84
10939--11004	24	2.6	26	81	11	75	40	3	1	54	1.25
10914--11000	26	3.3	26	78	10	81	43	3	2	50	1.31
11564--11604	8	5.0	8	84	3	55	43	0	0	56	0.99
11564--11604	16	2.5	17	96	4	75	43	0	0	56	0.99
11564--11612	16	2.9	17	87	6	73	46	0	0	53	1.00
12112--12247	20	6.9	19	79	11	139	40	25	11	22	1.88
12489--12543	22	2.5	22	81	0	65	18	41	16	23	1.89
13360--13421	22	2.9	22	92	2	99	29	14	37	19	1.91
13511--13558	20	2.4	20	82	6	62	31	6	22	39	1.79
13616--13682	20	3.3	20	71	19	59	34	10	22	32	1.88
13585--13723	40	3.5	40	79	10	108	37	12	21	28	1.90
13513--13746	60	3.9	60	74	7	197	35	10	22	30	1.88
13634--13723	20	4.5	19	77	15	85	37	10	23	28	1.87
15826--15932	39	2.7	39	75	13	112	46	0	15	36	1.53
34383--34473	34	2.7	32	76	19	87	54	2	13	29	1.50
34382--34506	32	3.8	32	75	11	101	53	3	12	30	1.54
47397--47433	16	2.2	18	85	9	51	29	5	5	59	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48016--48109	35	2.7	34	80	11	93	34	6	19	40	1.77
48052--48111	21	3.2	21	65	30	62	31	5	20	43	1.73
48045--48163	35	3.3	36	84	6	152	34	3	18	43	1.67
52638--52767	35	3.7	34	85	7	100	32	6	19	42	1.76
52674--52734	21	3.2	21	65	29	64	31	4	21	42	1.74
52666--52784	35	3.3	37	88	8	174	31	5	19	43	1.72
54686--54779	49	1.9	49	97	0	179	45	8	8	37	1.65
65153--65187	18	1.9	18	94	0	61	48	11	0	40	1.39
65212--65244	16	2.1	16	94	0	57	36	6	0	57	1.23
65191--65259	21	3.3	21	65	4	50	44	4	0	50	1.21
65193--65298	43	2.5	41	86	7	142	42	5	0	51	1.25
65278--65336	32	1.9	32	86	6	86	33	6	3	55	1.43
65340--65418	28	2.7	29	88	5	97	60	0	2	36	1.10
65336--65419	31	2.8	30	82	12	109	60	0	2	36	1.10
65435--65529	30	3.2	30	86	1	129	50	1	8	40	1.40
65571--65622	18	2.8	18	85	2	68	36	0	15	48	1.45
66451--66550	43	2.4	42	86	8	132	21	20	37	22	1.95
66451--66550	22	4.7	21	80	14	116	21	20	37	22	1.95
66630--66687	30	2.0	29	90	10	91	44	17	5	32	1.70
66630--66689	29	2.0	30	93	6	104	43	16	6	33	1.74
66800--66839	21	1.9	21	89	0	62	47	7	12	32	1.69
67032--67080	25	2.0	24	92	4	80	55	4	0	40	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68980--69052	25	3.0	24	71	13	67	50	15	5	28	1.66
70412--70460	21	2.3	20	80	10	53	46	14	2	36	1.56
72378--72438	13	4.7	13	89	0	95	32	19	19	27	1.96
73530--73563	16	2.1	16	94	0	59	2	26	0	70	1.01
78318--78371	2	27.5	2	96	3	101	50	0	0	50	1.00
78534--78582	13	3.8	13	86	0	71	34	18	18	28	1.94
78528--78582	26	2.1	26	86	0	74	38	16	18	27	1.92
79523--79635	60	1.9	60	81	3	138	34	14	18	32	1.91
81195--81228	2	17.0	2	100	0	68	50	0	0	50	1.00
81727--81846	35	3.1	38	71	16	104	45	7	4	42	1.51
81778--81888	36	3.2	33	82	12	107	41	9	5	44	1.59
81820--81846	13	2.1	13	100	0	54	40	7	7	44	1.60
81810--81888	36	2.3	34	87	10	108	41	10	5	43	1.60
81824--81901	36	2.1	36	83	6	95	34	11	10	43	1.75
82306--82357	20	2.6	20	96	0	95	50	3	3	42	1.39
83937--84073	35	3.9	35	84	1	186	21	19	16	43	1.88

Tables:   1

The End!