Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004648.1 Hibiscus syriacus cultivar Beakdansim tig00010418_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77794

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
884--925
22
1.9
22
90
0
66
42
0
4
52
1.22
895--936
22
1.9
22
85
0
57
38
2
11
47
1.53
1070--1121
12
4.1
12
83
14
52
13
1
3
80
0.93
4819--5340
54
9.7
54
87
0
679
36
19
17
27
1.93
4855--4940
27
3.2
27
63
12
68
36
18
17
27
1.94
4936--5021
27
3.2
27
63
18
70
40
18
15
25
1.89
4819--5340
161
3.2
161
87
1
733
36
19
17
27
1.93
4819--5340
107
4.9
108
84
4
669
36
19
17
27
1.93
10787--10959
90
1.9
89
94
1
301
38
10
6
44
1.66
20923--20992
20
3.5
20
94
0
113
47
11
18
22
1.81
21433--21518
27
3.2
27
62
6
66
36
20
17
25
1.95
21397--21901
54
9.4
54
85
1
609
35
20
17
26
1.95
24114--24187
3
25.0
3
78
8
71
37
0
0
62
0.96
24146--24194
15
3.2
15
85
2
71
48
0
0
51
1.00
25619--25653
3
11.7
3
93
0
61
31
0
2
65
1.07
25733--26041
155
2.0
154
87
4
433
39
5
6
48
1.53
26024--26082
2
29.5
2
100
0
118
50
0
0
49
1.00
37326--37367
14
3.0
14
80
16
52
76
0
14
9
1.02
38362--38437
22
3.5
22
92
0
125
35
18
10
35
1.85
38830--39162
123
2.7
122
88
2
463
40
13
19
26
1.89
39226--39327
39
2.6
38
92
3
159
50
7
22
18
1.72
39559--39619
3
21.0
3
76
6
63
37
0
1
60
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41040--41080
17
2.4
19
80
19
54
43
0
0
56
0.99
46535--46570
17
2.1
17
94
0
63
38
22
2
36
1.69
53304--53374
8
8.8
8
76
11
56
40
1
2
54
1.23
53504--53538
15
2.3
15
95
0
61
28
42
25
2
1.69
54083--54135
24
2.3
23
87
6
72
28
16
13
41
1.86
54896--54955
11
5.5
11
81
0
75
43
18
18
20
1.88
55106--55225
50
2.4
50
86
2
163
43
13
15
27
1.84
56088--56165
23
3.4
23
73
7
77
11
20
15
52
1.73
59254--59297
18
2.4
18
100
0
88
38
40
4
15
1.68
59263--59301
18
2.4
16
87
12
53
38
41
2
17
1.64
61247--61312
34
1.9
34
93
0
114
45
19
18
16
1.86
62791--62820
3
9.7
3
92
7
51
33
0
0
66
0.92
64224--64316
30
3.1
30
78
6
98
20
11
10
56
1.64
64301--64352
27
2.0
26
84
3
68
21
7
9
61
1.51
68462--68516
16
3.4
16
76
0
65
43
40
9
7
1.64
68501--68543
18
2.4
18
80
0
50
37
44
13
4
1.65

Tables:   1

The End!