Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004649.1 Hibiscus syriacus cultivar Beakdansim tig00010420_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86001

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4889--4938
3
16.7
3
100
0
100
0
68
0
32
0.90
6460--6500
21
1.9
22
95
5
75
36
9
26
26
1.88
10616--10655
19
2.1
19
86
9
55
72
5
22
0
1.04
11665--11732
33
2.1
33
88
0
100
33
14
20
30
1.93
11886--11965
37
2.2
37
84
4
99
26
18
15
40
1.90
12012--12131
36
3.3
37
80
6
122
31
21
10
36
1.87
12387--12453
26
2.5
26
85
4
80
29
11
11
46
1.77
13345--13386
20
2.2
19
86
4
57
78
7
7
7
1.09
14335--14407
29
2.5
29
78
14
71
17
8
8
65
1.43
17556--17617
25
2.5
26
84
10
85
20
9
0
69
1.16
17572--17614
20
2.2
19
88
12
61
23
6
0
69
1.12
29908--29940
14
2.3
15
89
5
50
21
6
0
72
1.05
31272--31315
14
3.2
13
80
6
52
20
2
2
75
1.03
35573--35622
18
2.8
18
79
11
66
46
28
20
6
1.74
41715--41750
18
1.9
19
88
5
56
22
11
25
41
1.86
42791--42815
3
8.3
3
100
0
50
0
0
32
68
0.90
43023--43062
20
2.1
19
85
4
53
55
0
2
42
1.13
43047--43071
13
1.9
13
100
0
50
76
0
8
16
1.02
43772--43809
20
1.9
20
88
0
58
34
0
2
63
1.09
46007--46067
6
10.2
6
96
0
95
29
49
16
4
1.66
46065--46113
5
9.8
5
93
0
62
16
36
40
6
1.73
51849--51909
6
10.2
6
94
0
86
31
47
16
4
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51907--51955
5
9.8
5
93
0
62
16
36
40
6
1.73
55741--56030
116
2.5
115
83
3
343
28
23
14
33
1.94
56400--56441
18
2.4
18
92
4
68
11
16
16
54
1.70
56407--56441
18
1.9
18
100
0
70
11
17
17
54
1.71
56408--56455
18
2.7
18
87
6
62
12
20
16
50
1.78
57122--57331
114
1.8
114
83
4
280
29
14
17
38
1.89
61804--61915
14
7.7
15
66
18
58
64
4
9
21
1.42
61938--62337
116
3.4
114
80
4
451
26
21
15
37
1.92
63261--63473
6
35.5
6
98
0
327
16
13
33
36
1.88
63474--63559
18
5.0
18
79
11
90
37
8
13
40
1.75
63500--63541
20
2.1
20
90
0
66
38
7
11
42
1.69
63475--63560
6
14.0
6
79
4
73
37
6
13
41
1.72
63861--63908
19
2.6
18
78
12
53
70
4
2
22
1.15
69388--69417
13
2.3
13
94
0
51
80
0
0
20
0.72
70492--70520
11
2.6
11
100
0
58
24
0
0
75
0.80
73080--73142
31
2.0
31
84
0
81
26
11
7
53
1.63
78063--78100
18
2.1
18
100
0
76
39
13
21
26
1.89
79203--79265
21
3.0
21
75
9
65
30
23
19
26
1.98
85709--85765
21
2.7
21
86
0
78
29
24
21
24
1.99

Tables:   1

The End!