Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000465.1 Hibiscus syriacus cultivar Beakdansim tig00000862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52865

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24139--24179
16
2.6
16
92
0
64
26
4
34
34
1.78
27993--28034
21
2.0
22
85
4
59
35
9
11
42
1.74
32461--32513
22
2.4
21
78
9
61
58
15
0
26
1.37
33659--33696
20
1.9
20
100
0
76
63
0
34
2
1.09
33660--33719
20
3.0
20
85
4
68
70
0
28
1
0.97
34663--34699
19
1.9
19
88
0
56
32
2
5
59
1.34
35068--35112
23
1.9
24
82
13
58
57
11
11
20
1.63
35969--36002
18
1.9
18
88
5
52
23
2
0
73
0.97
35968--36109
30
4.6
29
68
25
87
22
4
2
71
1.14
35989--36038
24
2.1
24
88
0
73
18
2
4
76
1.04
36065--36103
12
3.3
12
82
7
53
15
5
0
79
0.90
36347--36393
7
6.9
7
86
13
71
2
0
12
85
0.70
36320--36399
13
5.8
13
73
16
54
11
1
7
80
0.97
40102--40300
95
2.1
95
89
1
303
33
16
18
31
1.93
41561--42658
85
13.0
85
86
2
1426
35
21
18
25
1.96
41556--42712
335
3.4
335
87
1
1526
35
20
18
25
1.95
44504--44572
3
23.3
3
75
21
58
27
1
1
69
1.05
44504--44584
27
3.0
26
76
16
78
24
3
1
70
1.11
44865--44934
8
8.2
8
73
17
61
11
2
4
81
0.94
44867--44934
36
1.9
35
82
11
86
11
2
4
80
0.96
45637--45671
13
2.7
13
91
8
54
37
2
20
40
1.67
47731--47816
20
4.6
19
72
24
76
38
2
5
53
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47731--47850
54
2.2
54
88
7
174
39
2
6
51
1.42
48930--48955
8
3.2
8
100
0
52
65
0
0
34
0.93
51352--51507
32
4.9
32
76
6
156
30
17
19
32
1.95
52188--52232
21
2.1
21
87
0
63
28
22
22
26
1.99

Tables:   1

The End!