genome.fa.s4650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004650.1 Hibiscus syriacus cultivar Beakdansim tig00010423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66677

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4724--4804	40	2.0	40	90	0	126	19	18	16	45	1.85
5050--5087	19	2.0	20	89	5	60	47	0	0	52	1.00
5054--5150	23	4.2	22	68	18	63	51	1	0	47	1.07
5256--5345	30	3.0	28	77	15	83	47	3	0	48	1.18
5323--5355	13	2.5	13	86	13	50	66	0	0	33	0.92
5550--5590	20	2.0	20	85	0	55	29	19	12	39	1.88
5564--5622	29	2.0	29	93	0	100	30	20	10	38	1.86
5573--5624	14	3.6	14	84	5	77	34	21	7	36	1.82
12140--12178	3	13.0	3	94	0	69	35	0	0	64	0.94
18242--18303	25	2.5	25	94	0	106	25	3	17	53	1.59
19151--19191	17	2.4	17	87	4	64	75	0	21	2	0.92
20703--20766	33	1.9	34	83	3	85	26	15	28	29	1.96
25057--25087	10	3.1	10	90	0	53	70	3	16	9	1.26
26177--26220	13	3.5	13	93	3	72	40	0	0	59	0.98
27651--27929	58	4.8	58	89	3	436	36	18	11	33	1.86
33043--33368	58	5.6	58	95	0	573	34	20	11	33	1.89
33697--33749	22	2.5	20	77	11	61	28	24	15	32	1.95
35387--35517	66	2.0	66	96	0	244	23	16	25	33	1.96
36112--36194	42	2.0	42	92	0	139	37	27	26	8	1.85
36256--36393	43	3.2	43	87	1	188	28	18	26	26	1.98
40376--40440	28	2.3	28	78	5	69	46	24	0	29	1.53
41131--41226	31	3.1	30	82	12	115	38	5	7	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41131--41212	31	2.6	32	85	12	116	37	4	8	48	1.55
44927--44992	2	33.0	2	100	0	132	50	0	0	50	1.00
45551--45629	31	2.5	30	74	11	79	25	20	12	41	1.87
45737--45779	17	2.4	18	92	3	70	30	11	16	41	1.83
48597--48645	23	2.2	22	85	3	62	51	8	14	26	1.70
49375--49420	20	2.3	20	79	20	60	34	26	15	23	1.94
53618--53821	76	2.7	77	87	0	266	41	17	19	21	1.91
58839--58880	20	2.0	20	86	4	57	42	0	14	42	1.45
58852--58889	20	1.9	20	89	10	60	42	0	7	50	1.31
59846--59929	38	2.2	38	100	0	168	34	2	23	39	1.68
63437--63504	30	2.4	27	74	21	68	52	0	5	41	1.25
63862--63941	38	2.1	39	83	6	101	40	5	0	55	1.22
64025--64144	51	2.4	51	81	1	143	25	13	13	47	1.79
65809--65885	34	2.2	34	84	11	95	61	16	1	20	1.42
66080--66116	18	2.1	18	89	0	56	16	32	18	32	1.93

Tables:   1

The End!