genome.fa.s4652.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004652.1 Hibiscus syriacus cultivar Beakdansim tig00010426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38747

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239--271	17	1.9	17	88	11	50	36	21	3	39	1.69
5362--5414	21	2.5	21	81	6	72	26	15	13	45	1.82
13116--13148	6	5.7	6	85	7	50	81	15	3	0	0.80
13108--13149	22	1.9	22	85	9	59	78	16	4	0	0.91
18347--18373	6	4.5	6	100	0	54	0	14	51	33	1.43
18448--18534	41	2.1	39	80	12	102	40	22	20	16	1.91
18457--18541	41	2.0	42	90	2	136	40	22	22	15	1.91
18482--18671	101	1.9	101	87	4	285	34	21	23	20	1.97
18581--18646	21	3.2	21	69	4	62	39	25	16	18	1.91
19089--19215	42	3.1	41	77	15	106	40	3	11	44	1.55
19089--19415	37	8.5	36	73	17	164	43	3	7	45	1.50
19279--19303	2	12.5	2	100	0	50	52	0	0	48	1.00
19289--19450	35	4.6	33	78	12	137	44	2	3	49	1.33
19203--19378	86	2.1	82	81	14	200	45	3	5	45	1.44
19343--19480	35	3.8	37	74	12	110	44	2	2	50	1.26
19418--19475	25	2.2	27	81	9	75	44	0	0	55	0.99
19422--19469	24	2.0	24	88	8	71	43	0	0	56	0.99
20687--20846	18	8.7	18	68	20	64	12	7	2	77	1.07
20773--20870	6	15.3	6	75	21	67	15	4	3	77	1.04
20779--20847	9	7.2	9	69	18	50	10	5	2	81	0.97
20758--20847	39	2.3	40	83	11	107	11	7	2	78	1.03
20773--20841	21	3.5	20	79	13	72	10	5	2	81	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20685--20852	32	5.4	31	74	14	98	13	7	2	76	1.10
20851--20885	3	11.7	3	93	0	61	31	0	2	65	1.07
20812--20861	17	3.1	17	71	11	50	16	2	6	76	1.08
21783--21836	24	2.2	24	93	0	90	14	9	14	61	1.57
22013--22107	23	3.9	23	73	11	82	14	14	14	55	1.69
22148--22178	16	1.9	16	93	0	53	54	22	19	3	1.58
24669--24727	21	2.7	22	73	5	66	22	23	20	33	1.97
24713--24807	20	4.8	20	78	10	70	30	23	22	24	1.99
24736--24808	20	3.6	21	81	7	80	27	24	23	24	2.00
26225--26293	24	2.9	24	89	4	104	28	27	20	23	1.99
26225--26294	23	3.0	23	89	2	104	30	27	20	22	1.98
26310--26527	103	2.1	103	93	0	373	36	23	12	26	1.91
28322--28408	20	4.4	20	85	4	106	11	14	22	50	1.75
30138--30187	18	2.8	18	96	0	91	32	18	6	44	1.74
30337--30384	20	2.4	20	82	0	60	35	25	18	20	1.95
30408--30454	20	2.5	19	89	6	69	14	19	27	38	1.91
32432--32497	30	2.2	30	97	0	123	30	1	13	54	1.48
32647--32891	20	12.9	20	79	10	262	23	20	22	34	1.97
32606--32891	40	7.7	36	73	16	169	23	20	21	35	1.96
32664--32883	54	4.0	54	87	3	287	21	20	22	35	1.96
32687--32888	74	2.7	73	78	6	228	21	20	22	35	1.96
33064--33097	17	2.0	17	94	0	59	20	2	23	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35347--35399	24	2.2	24	87	9	74	41	20	16	20	1.90
36220--36349	20	6.3	20	81	7	136	30	20	23	25	1.98
37082--37146	26	2.4	27	80	10	80	35	35	7	21	1.82
37141--37225	43	2.0	42	90	2	134	31	30	14	23	1.94
38451--38492	13	3.2	13	93	0	66	19	47	19	14	1.82

Tables:   1

The End!