Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004654.1 Hibiscus syriacus cultivar Beakdansim tig00010431_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63494

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1558--1668
44
2.5
43
78
5
107
36
11
23
28
1.90
1608--1779
92
1.9
94
80
7
208
34
13
20
31
1.91
2061--2087
14
1.9
14
100
0
54
44
0
3
51
1.19
2796--2833
18
2.2
17
90
4
58
39
2
52
5
1.38
3144--3204
28
2.1
30
82
11
74
39
1
3
55
1.26
9834--9875
20
2.0
20
86
9
57
26
42
0
30
1.55
20947--20976
3
10.0
3
92
0
51
66
3
0
30
1.07
21129--21563
98
4.4
97
86
4
543
30
18
18
32
1.95
21129--21563
195
2.2
196
87
2
624
30
18
18
32
1.95
23000--23105
39
2.8
38
83
1
113
29
22
15
33
1.94
23015--23105
38
2.4
39
84
1
112
29
25
13
31
1.93
24773--24813
18
2.3
18
91
8
66
0
19
0
80
0.71
24771--24813
8
4.9
9
86
13
63
0
20
0
79
0.74
27900--27953
20
2.7
20
82
5
65
33
14
27
24
1.94
28374--29056
58
11.8
58
90
1
991
34
11
18
35
1.87
28374--29056
117
5.9
116
90
1
991
34
11
18
35
1.87
29272--29665
68
5.8
68
90
0
590
31
16
24
27
1.96
29620--29768
81
1.8
81
81
2
183
38
12
23
26
1.90
29984--30053
22
3.1
22
64
18
54
41
8
21
28
1.82
29804--30114
45
7.0
45
88
0
437
36
9
24
29
1.88
33803--33837
18
1.9
18
94
0
61
71
0
11
17
1.14
33984--34013
2
15.5
2
93
6
53
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34086--34171
2
43.5
2
88
6
113
52
0
3
44
1.18
36510--36676
65
2.5
65
83
4
192
37
9
21
31
1.86
36625--36850
36
6.4
36
72
10
171
39
12
19
29
1.88
36659--36926
101
2.6
101
80
2
268
38
12
17
31
1.88
37967--38003
16
2.3
16
100
0
74
24
21
13
40
1.89
38303--38437
69
2.0
69
94
2
236
28
15
19
37
1.92
38516--38573
26
2.2
26
82
8
73
1
13
5
79
0.98
41624--41684
25
2.4
25
83
0
77
75
4
4
14
1.14
41747--41793
17
2.7
17
81
12
60
72
0
12
14
1.13
41914--41943
2
15.5
2
93
6
53
53
0
0
46
1.00
41953--42018
18
3.5
18
74
11
69
62
1
6
30
1.29
42052--42117
2
33.0
2
90
6
98
53
0
1
45
1.09
42102--42154
23
2.3
23
77
6
63
71
0
5
22
1.06
52379--52485
32
3.4
32
81
3
101
29
29
22
17
1.97
52399--52485
32
2.8
32
83
1
104
28
29
22
18
1.97
54835--54932
13
7.2
13
71
20
67
33
8
2
56
1.41
54831--54984
7
21.9
7
69
25
69
33
11
1
53
1.44
54826--54980
71
2.2
69
83
11
190
34
10
1
54
1.43
54967--55008
17
2.4
17
88
4
57
30
7
4
57
1.47
55404--55444
20
2.0
20
86
9
57
39
2
17
41
1.62
55470--55542
6
10.7
7
79
10
64
49
1
2
46
1.24
55484--55569
2
44.0
2
78
17
92
51
1
3
44
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55637--55719
40
2.0
41
83
2
105
49
6
8
36
1.58
58617--58659
17
2.5
19
78
21
58
65
9
4
20
1.40
58624--58662
17
2.4
17
95
4
71
58
12
5
23
1.54
60489--60535
21
2.2
21
100
0
94
25
23
19
31
1.98

Tables:   1

The End!