genome.fa.s4655.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004655.1 Hibiscus syriacus cultivar Beakdansim tig00010435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60378

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1454--1496	11	3.9	11	100	0	86	83	0	9	6	0.80
1454--1519	15	4.2	15	82	7	78	83	0	9	7	0.82
2502--3130	135	4.6	137	83	5	740	30	27	15	26	1.96
3302--3374	3	24.7	3	84	13	98	35	1	0	63	1.04
3302--3374	27	2.7	26	85	6	110	35	1	0	63	1.04
9822--9880	8	7.4	8	75	12	59	49	10	1	38	1.47
9808--9858	24	2.1	24	85	7	68	49	7	0	43	1.32
20958--21183	89	2.5	90	96	2	413	31	23	20	24	1.98
21075--21351	127	2.1	129	88	3	405	32	22	20	24	1.98
21392--21838	43	10.4	43	75	8	338	29	29	12	28	1.93
21370--21625	85	3.0	84	77	6	248	30	30	12	27	1.92
21392--21858	171	2.7	172	85	3	570	29	28	13	28	1.94
21392--21838	214	2.1	214	89	0	680	29	29	12	28	1.93
21880--21970	39	2.3	39	94	0	164	37	15	15	31	1.89
21962--22005	15	2.9	15	82	0	61	29	20	27	22	1.99
21993--22078	36	2.4	36	90	0	127	34	16	25	23	1.95
22053--22093	15	2.7	15	88	0	64	31	17	31	19	1.95
22032--22177	72	2.0	72	89	2	222	34	15	25	25	1.94
22083--22132	21	2.4	21	100	0	100	38	10	26	26	1.87
23671--23717	24	1.9	24	83	12	60	4	17	2	76	1.04
24933--24983	26	2.0	25	85	11	68	52	5	21	19	1.66
29295--29353	24	2.5	24	88	2	93	22	5	18	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36298--36952	43	15.2	41	76	9	330	25	16	5	51	1.67
36363--36966	44	14.0	43	75	11	427	25	18	5	50	1.67
36357--36966	86	7.1	85	79	6	534	25	18	5	50	1.67
43973--44046	37	2.0	37	84	7	98	48	2	1	47	1.24
44554--44605	21	2.4	22	77	6	61	40	0	7	51	1.30
44619--44644	12	2.2	12	100	0	52	34	7	0	57	1.27
47081--47661	4	148.2	4	94	4	1017	49	24	0	25	1.53
47865--47910	20	2.3	20	92	0	83	36	21	15	26	1.93
47874--47917	20	2.2	20	87	0	61	38	25	11	25	1.89
53149--53182	2	17.0	2	100	0	68	50	0	0	50	1.00
54002--54064	21	2.9	22	78	7	74	23	26	23	25	2.00
54908--54958	19	2.7	19	90	0	84	25	15	31	27	1.96
55763--55816	23	2.2	24	87	6	74	25	18	22	33	1.97
59132--59196	33	2.0	33	96	0	121	13	10	30	44	1.78
60112--60156	18	2.5	18	96	0	81	13	26	33	26	1.93

Tables:   1

The End!