Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004656.1 Hibiscus syriacus cultivar Beakdansim tig00010437_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 112941
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33
Found at i:16766 original size:21 final size:21
Alignment explanation
Indices: 16742--16781 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
16732 TTTTCTCCTC
* *
16742 TACACTCAACCCAAAGAGGAT
1 TACACTAAACCAAAAGAGGAT
*
16763 TACATTAAACCAAAAGAGG
1 TACACTAAACCAAAAGAGG
16782 GTATTACCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.23, G:0.15, T:0.15
Consensus pattern (21 bp):
TACACTAAACCAAAAGAGGAT
Found at i:24426 original size:15 final size:15
Alignment explanation
Indices: 24406--24435 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24396 GAGACATTAT
*
24406 CCGCCCCGCATCCGC
1 CCGCCCCGCAGCCGC
24421 CCGCCCCGCAGCCGC
1 CCGCCCCGCAGCCGC
24436 TCACCCAGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.67, G:0.23, T:0.03
Consensus pattern (15 bp):
CCGCCCCGCAGCCGC
Found at i:24574 original size:21 final size:23
Alignment explanation
Indices: 24550--24599 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
24540 TTATCCAAAT
*
24550 ATTAAGG-ATATTTAG-TCTTTA
1 ATTAAGGAATATTCAGCTCTTTA
*
24571 ATTAGGGAAATATTCAGCTCTTTA
1 ATTAAGG-AATATTCAGCTCTTTA
24595 ATTAA
1 ATTAA
24600 ACCCATAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 6 0.26
23 7 0.30
24 10 0.43
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (23 bp):
ATTAAGGAATATTCAGCTCTTTA
Found at i:25805 original size:45 final size:46
Alignment explanation
Indices: 25721--25807 Score: 158
Period size: 45 Copynumber: 1.9 Consensus size: 46
25711 AAAAGCCTGG
*
25721 GTGCATCGATGCATGGTCATGTGCATCGATGCATCAAATGCACTGA
1 GTGCATCGATGCATGGTCATGTGCATCGATGCATAAAATGCACTGA
25767 GTGCATCGATGCATGGT-ATGTGCATCGATGCATAAAATGCA
1 GTGCATCGATGCATGGTCATGTGCATCGATGCATAAAATGCA
25808 TTCGATGTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
45 23 0.57
46 17 0.43
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (46 bp):
GTGCATCGATGCATGGTCATGTGCATCGATGCATAAAATGCACTGA
Found at i:25855 original size:20 final size:20
Alignment explanation
Indices: 25827--25865 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25817 CAAGAAATTA
25827 ATTGATGCATCGATGCATGG
1 ATTGATGCATCGATGCATGG
* *
25847 ATTGGTGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
25866 CCCTTGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (20 bp):
ATTGATGCATCGATGCATGG
Found at i:26238 original size:19 final size:20
Alignment explanation
Indices: 26200--26239 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
26190 TTTGAAATTA
*
26200 CTCCCCCTTACTATAACATTT
1 CTCCCCCTTA-TAAAACATTT
26221 CTCCCCCTT-TAAAACATTT
1 CTCCCCCTTATAAAACATTT
26240 TACACTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38
Consensus pattern (20 bp):
CTCCCCCTTATAAAACATTT
Found at i:28605 original size:44 final size:44
Alignment explanation
Indices: 28513--28609 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 44
28503 GACCCTGTGC
* * *
28513 ATCGATGCACATTCAAGGCGTGCATCGGTGCATTAACATGATGA
1 ATCGATGCACATTCAAGGCGTGCATCGATGCACTAACAAGATGA
** *
28557 ATCGATGCACATTCAAAGG-GATGCATCGATGCACTATTAAG-TGT
1 ATCGATGCACATTC-AAGGCG-TGCATCGATGCACTAACAAGATGA
28601 ATCGATGCA
1 ATCGATGCA
28610 TGAAGCACAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 26 0.58
45 19 0.42
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGCGTGCATCGATGCACTAACAAGATGA
Found at i:36242 original size:19 final size:19
Alignment explanation
Indices: 36218--36254 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
36208 AAATGAATAA
36218 AATTAAAATTCAAAGACTG
1 AATTAAAATTCAAAGACTG
*
36237 AATTAAAATTCAAGGACT
1 AATTAAAATTCAAAGACT
36255 AAAAATATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.27
Consensus pattern (19 bp):
AATTAAAATTCAAAGACTG
Found at i:37279 original size:3 final size:3
Alignment explanation
Indices: 37271--37377 Score: 178
Period size: 3 Copynumber: 35.7 Consensus size: 3
37261 AATATATATT
*
37271 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
37319 TAA TAA TAA TAG TAA AAA TAA TAA TAA TAA TAA AAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
37367 TAA TAA TAA TA
1 TAA TAA TAA TA
37378 TGGATAAAAA
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 96 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:37861 original size:113 final size:113
Alignment explanation
Indices: 37627--38409 Score: 1075
Period size: 113 Copynumber: 6.8 Consensus size: 113
37617 TCTTGATGAG
* ** * *
37627 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGGTTCTTTCTCT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT-GAACTCTATCT
* * **
37692 GGAAAAGCTGATCCATTAAATGATGGATTCATATAAAAGGTTGAACAAA
65 GGAAAAGATGATCCATCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
* * *
37741 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTATCTG
*
37806 GAAAAGATGATCCACCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
66 GAAAAGATGATCCATCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
37854 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCTAT
* * * * *
37919 CTGGCAGAA-ATAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAA
63 CTGG-AAAAGATGATCCATCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
*
37970 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCTAT
* * * * * *** * *
38035 CTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAAGTTGAACAAG
63 CTGGAAAAGATGATCCATCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
* *
38086 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTATCTG
* * * * *
38151 GCAGAA-ATAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAA
66 G-AAAAGATGATCCATCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
* *
38199 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTATCTG
*
38264 GAAAAGATGATCCACCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
66 GAAAAGATGATCCATCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
38312 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCTAT
* *
38377 CTGGAAAAGCTGTTCCATCAAATGATGGATTCA
63 CTGGAAAAGATGATCCATCAAATGATGGATTCA
38410 AATCTTTGCT
Statistics
Matches: 597, Mismatches: 62, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
112 3 0.01
113 283 0.47
114 54 0.09
115 1 0.00
116 253 0.42
117 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTATCTG
GAAAAGATGATCCATCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
Found at i:38133 original size:229 final size:227
Alignment explanation
Indices: 37627--38380 Score: 1138
Period size: 229 Copynumber: 3.3 Consensus size: 227
37617 TCTTGATGAG
** * *
37627 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-GAGTTCTTCTCATTATGGTTCTTTCTC
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAGAGTTCTTCTCATTAT-GAACTCTATC
* * * * ** *
37691 TGG-A-AAAGCTGATCCATTAAATGATGGATTCATATAAAAGGTTGAACAAATTCTTCTCATTAT
65 TGGCAGAAA--TAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAATTCTTCTCATTAT
*
37754 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCC
128 GAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCC
37819 ACCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
193 ACCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
*
37854 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-A-GAGTTCTTCTCATTATGAACTCTAT
37919 CTGGCAGAAATAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAATTCTTCTCATTATG
64 CTGGCAGAAATAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAATTCTTCTCATTATG
* * * * *
37984 AATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGAT
129 AATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGAT
* * * *** * *
38049 CCATCAAATGATGAATTTAAACAAAAAGTTGAACAAG
191 CCACCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
*
38086 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-GAGTTCTTCTCATTATGAACTCTACCT
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAGAGTTCTTCTCATTATGAACTCTATCT
38150 GGCAGAAATAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAATTCTTCTCATTATGAA
66 GGCAGAAATAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAATTCTTCTCATTATGAA
38215 TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCCACC
131 TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCCACC
38280 AAATGATGGATTCAGGTAAAAGGTTGAACAAA
196 AAATGATGGATTCAGGTAAAAGGTTGAACAAA
*
38312 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-A-GAGTTCTTCTCATTATGAACTCTAT
38377 CTGG
64 CTGG
38381 AAAAGCTGTT
Statistics
Matches: 473, Mismatches: 43, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
226 99 0.21
227 36 0.08
229 219 0.46
230 17 0.04
231 3 0.01
232 99 0.21
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (227 bp):
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAGAGTTCTTCTCATTATGAACTCTATCT
GGCAGAAATAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAATTCTTCTCATTATGAA
TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCCACC
AAATGATGGATTCAGGTAAAAGGTTGAACAAA
Found at i:39297 original size:167 final size:166
Alignment explanation
Indices: 39052--39591 Score: 905
Period size: 167 Copynumber: 3.3 Consensus size: 166
39042 TAGTTCTTAC
*
39052 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCTAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATT-ATCTTCCAAA
39117 TTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
65 TTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
39182 AGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGT
130 AGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGT
39219 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTTATCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAA-TTATCTTCCAAA
39284 TTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
65 TTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
39349 AGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGT
130 AGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGT
* * * *
39386 CCAACCAGATCAGATGACTCAAAGAACACTTCCAGAAGATGCTATTGAGC-----ATCCTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT-AACAAATTATCTTCCAAA
* *
39446 TTCAATGATTGATTCTGTCC-AACCAGATTAGATAACTCAAAGAACACTTCCAGAAGATGCTATT
65 TTCAATGATTGGTTCTG-CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT
* *
39510 -AACAAATTCATCTTCCAAATTCAATGATTGATTCTGT
129 GAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGT
*
39547 CCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
39592 CGAGTGTCCA
Statistics
Matches: 360, Mismatches: 10, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
161 79 0.22
162 68 0.19
163 2 0.01
167 207 0.57
168 4 0.01
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (166 bp):
CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTATCTTCCAAAT
TCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGA
GCAAATTCATCTTCCAAATTCAATGATTGGTTCTGT
Found at i:39314 original size:83 final size:85
Alignment explanation
Indices: 39051--39591 Score: 896
Period size: 83 Copynumber: 6.5 Consensus size: 85
39041 GTAGTTCTTA
*
39051 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT-AACAAATTCATCTTCTA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAACAAATTCATCTTCCA
39115 AATTCAATGATTGGTTCTG-
66 AATTCAATGATTGGTTCTGT
*
39134 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAACAAATTCATCTTCCA
39199 AATTCAATGATTGGTTCTGT
66 AATTCAATGATTGGTTCTGT
*
39219 -CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT-AACAAATTTATCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAACAAATTCATCTTCCA
39282 AATTCAATGATTGGTTCTG-
66 AATTCAATGATTGGTTCTGT
*
39301 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAACAAATTCATCTTCCA
39366 AATTCAATGATTGGTTCTGT
66 AATTCAATGATTGGTTCTGT
* *
39386 CC-AACCAGATCAGATGACTCAAAGAACACTTCCAGAAGATGCTATTGAGC--A-TC--C-TCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAACAAATTCATCTTCCA
*
39444 AATTCAATGATTGATTCTGT
66 AATTCAATGATTGGTTCTGT
*
39464 CC-AACCAGATTAGATAACTCAAAGAACACTTCCAGAAGATGCTATT-AACAAATTCATCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAACAAATTCATCTTCCA
*
39527 AATTCAATGATTGATTCTGT
66 AATTCAATGATTGGTTCTGT
39547 CC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
39592 CGAGTGTCCA
Statistics
Matches: 435, Mismatches: 12, Indels: 22
0.93 0.03 0.05
Matches are distributed among these distances:
77 2 0.00
78 67 0.15
79 2 0.00
80 2 0.00
81 2 0.00
82 2 0.00
83 195 0.45
84 161 0.37
85 2 0.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.27
Consensus pattern (85 bp):
CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAACAAATTCATCTTCCA
AATTCAATGATTGGTTCTGT
Found at i:39525 original size:245 final size:249
Alignment explanation
Indices: 39051--39591 Score: 925
Period size: 245 Copynumber: 2.2 Consensus size: 249
39041 GTAGTTCTTA
*
39051 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCTAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCCAA
39116 ATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT
66 ATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT
*
39181 GAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAAGAAC
131 GAGC-AATTCA-CTTCCAAATTCAATGATTGATTCTGTCAAACCAGATCAGATAACTCAAAGAAC
* *
39246 ACTTCCAGAAGATGCTATTAACAAATTTATCTTCCAAATTCAATGATTGGTTCTG-
194 ACTTCCAGAAGATGCTATTAACAAATTCATCTTCCAAATTCAATGATTGATTCTGT
*
39301 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT-AACAAATTCATCTTCCA
*
39366 AATTCAATGATTGGTTCTGTCC-AACCAGATCAGATGACTCAAAGAACACTTCCAGAAGATGCTA
65 AATTCAATGATTGGTTCTG-CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA
* *
39430 TTGAGC-A-TC-C-TCCAAATTCAATGATTGATTCTGTCCAACCAGATTAGATAACTCAAAGAAC
129 TTGAGCAATTCACTTCCAAATTCAATGATTGATTCTGTCAAACCAGATCAGATAACTCAAAGAAC
39491 ACTTCCAGAAGATGCTATTAACAAATTCATCTTCCAAATTCAATGATTGATTCTGT
194 ACTTCCAGAAGATGCTATTAACAAATTCATCTTCCAAATTCAATGATTGATTCTGT
39547 CC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
39592 CGAGTGTCCA
Statistics
Matches: 280, Mismatches: 8, Indels: 11
0.94 0.03 0.04
Matches are distributed among these distances:
245 144 0.51
246 3 0.01
248 2 0.01
249 1 0.00
250 47 0.17
251 81 0.29
252 2 0.01
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.27
Consensus pattern (249 bp):
CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCCAA
ATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT
GAGCAATTCACTTCCAAATTCAATGATTGATTCTGTCAAACCAGATCAGATAACTCAAAGAACAC
TTCCAGAAGATGCTATTAACAAATTCATCTTCCAAATTCAATGATTGATTCTGT
Found at i:51165 original size:30 final size:32
Alignment explanation
Indices: 51112--51170 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 32
51102 TGCAAATAAA
*
51112 ATGAAATATTAATAAGAAAATATATAAATACT
1 ATGAAATATTAATAAGAAAATATAAAAATACT
* *
51144 ATGAAA-A-TAATAAGTATATATAAAAAT
1 ATGAAATATTAATAAGAAAATATAAAAAT
51171 TTTGAAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 17 0.71
31 1 0.04
32 6 0.25
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.31
Consensus pattern (32 bp):
ATGAAATATTAATAAGAAAATATAAAAATACT
Found at i:52803 original size:15 final size:16
Alignment explanation
Indices: 52778--52807 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
52768 TAGTTTGTTT
52778 TTTTTTCTTTTCTCTG
1 TTTTTTCTTTTCTCTG
52794 TTTTTT-TTTTCTCT
1 TTTTTTCTTTTCTCT
52808 CCGGTTCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTTTCTTTTCTCTG
Found at i:53300 original size:3 final size:3
Alignment explanation
Indices: 53292--53407 Score: 196
Period size: 3 Copynumber: 38.7 Consensus size: 3
53282 AATATATATT
*
53292 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
53340 TAA TAA TAA TAA TAA TAA TAG TAA AAA TAA TAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
53388 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
53408 TGGATAAAAA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 105 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:60954 original size:41 final size:41
Alignment explanation
Indices: 60909--61049 Score: 255
Period size: 41 Copynumber: 3.4 Consensus size: 41
60899 ACGCGATAGT
60909 CGAAGTTCGCATTGCGATTCATTCCAATTCGTTGCGACAGG
1 CGAAGTTCGCATTGCGATTCATTCCAATTCGTTGCGACAGG
60950 CGAAGTTCGCATTGCGATTCATTCCAATTCGTTGCGACAGG
1 CGAAGTTCGCATTGCGATTCATTCCAATTCGTTGCGACAGG
* *
60991 CGAAGTTGGCATTGCGATTCATTCCAATTCGTTGCGATAGG
1 CGAAGTTCGCATTGCGATTCATTCCAATTCGTTGCGACAGG
*
61032 CGAAGTTCGCGTTGCGAT
1 CGAAGTTCGCATTGCGAT
61050 AGTCCAAATA
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 96 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (41 bp):
CGAAGTTCGCATTGCGATTCATTCCAATTCGTTGCGACAGG
Found at i:61140 original size:6 final size:6
Alignment explanation
Indices: 61129--61227 Score: 198
Period size: 6 Copynumber: 16.5 Consensus size: 6
61119 GACACGTATT
61129 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
61177 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
61225 ACC
1 ACC
61228 CGGGACGGGA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 93 1.00
ACGTcount: A:0.33, C:0.51, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:62064 original size:83 final size:83
Alignment explanation
Indices: 61865--62213 Score: 282
Period size: 83 Copynumber: 4.2 Consensus size: 83
61855 AATAGCGGCC
* * * * * * * * * *
61865 TTTTTAGAAAAACACCGCTAAAGACTCATACTATAGCGGCGTTTTTA-TAAAAACGACGCTAAAG
1 TTTTTATACAAACGCCGCTAAAGACGCATACTTTAGTGGCGTTTTAAGCACAAACGCCGCTAAAG
*
61929 AAT-GTACTGTAGTGGCG
66 AATAGTACTTTAGTGGCG
* * * * *
61946 TTTTTATACAAACACCGCTATAGAC-TAGTGA-TTTAGTGGCGTTTTTTA-TACAAACGCCGCTA
1 TTTTTATACAAACGCCGCTAAAGACGCA-T-ACTTTAGTGGCG-TTTTAAGCACAAACGCCGCTA
* *
62008 TAGACTAGTACTTTAGTGGCG
63 AAGAATAGTACTTTAGTGGCG
* * * * *
62029 TTTTTATACAAACGCTGCTAAAGACGCATACTTTAGTGGCGTTTTAAGCCCAAACGCCTCCAAAT
1 TTTTTATACAAACGCCGCTAAAGACGCATACTTTAGTGGCGTTTTAAGCACAAACGCCGCTAAAG
* **
62094 ACTCTTACTTTAGTGGCG
66 AATAGTACTTTAGTGGCG
* * * * *
62112 CTTTTATATAAACGCCGCTAAATACTG--TACTTTAATGGTGTTTTAAGCACAAACGCCGCTAAA
1 TTTTTATACAAACGCCGCTAAAGAC-GCATACTTTAGTGGCGTTTTAAGCACAAACGCCGCTAAA
* * *
62175 TAATCA-TTCTTTAGTGGTG
65 GAAT-AGTACTTTAGTGGCG
*
62194 TTTTTATACAAACGCTGCTA
1 TTTTTATACAAACGCCGCTA
62214 TATATATACC
Statistics
Matches: 219, Mismatches: 40, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
80 1 0.00
81 31 0.14
82 91 0.42
83 94 0.43
84 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (83 bp):
TTTTTATACAAACGCCGCTAAAGACGCATACTTTAGTGGCGTTTTAAGCACAAACGCCGCTAAAG
AATAGTACTTTAGTGGCG
Found at i:62207 original size:41 final size:40
Alignment explanation
Indices: 61865--62213 Score: 286
Period size: 41 Copynumber: 8.5 Consensus size: 40
61855 AATAGCGGCC
* * * * *
61865 TTTTTAGAAAAACACCGCTAAAGACTCATACTATAGCGGCG
1 TTTTTATACAAACGCCGCTAAAGACT-ATACTTTAGTGGCG
* * * * *
61906 TTTTTATAAAAACGACGCTAAAGAATGTACTGTAGTGGCG
1 TTTTTATACAAACGCCGCTAAAGACTATACTTTAGTGGCG
* *
61946 TTTTTATACAAACACCGCTATAGACTAGTGA-TTTAGTGGCG
1 TTTTTATACAAACGCCGCTAAAGACTA-T-ACTTTAGTGGCG
*
61987 TTTTTTATACAAACGCCGCTATAGACTAGTACTTTAGTGGCG
1 -TTTTTATACAAACGCCGCTAAAGACTA-TACTTTAGTGGCG
* *
62029 TTTTTATACAAACGCTGCTAAAGACGCATACTTTAGTGGCG
1 TTTTTATACAAACGCCGCTAAAGAC-TATACTTTAGTGGCG
* ** * * * *
62070 TTTTAAGCCCAAACGCCTCCAAATACTCTTACTTTAGTGGCG
1 TTTTTA-TACAAACGCCGCTAAAGACT-ATACTTTAGTGGCG
* * * * * *
62112 CTTTTATATAAACGCCGCTAAATACTGTACTTTAATGGTG
1 TTTTTATACAAACGCCGCTAAAGACTATACTTTAGTGGCG
* * * * * *
62152 TTTTAAGCACAAACGCCGCTAAATAATCATTCTTTAGTGGTG
1 TTTTTA-TACAAACGCCGCTAAAGACT-ATACTTTAGTGGCG
*
62194 TTTTTATACAAACGCTGCTA
1 TTTTTATACAAACGCCGCTA
62214 TATATATACC
Statistics
Matches: 251, Mismatches: 48, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
40 47 0.19
41 118 0.47
42 86 0.34
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (40 bp):
TTTTTATACAAACGCCGCTAAAGACTATACTTTAGTGGCG
Found at i:65704 original size:21 final size:22
Alignment explanation
Indices: 65680--65739 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 22
65670 TGATTTATTA
*
65680 TTATGGATTTCAATTTTCTTG-
1 TTATGGATTTCAAGTTTCTTGT
* *
65701 TTATGGATTTTAAGTTTGTTGT
1 TTATGGATTTCAAGTTTCTTGT
*
65723 TTATGGATGTCAAGTTT
1 TTATGGATTTCAAGTTT
65740 ATTGGAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.20, C:0.05, G:0.20, T:0.55
Consensus pattern (22 bp):
TTATGGATTTCAAGTTTCTTGT
Found at i:66019 original size:42 final size:43
Alignment explanation
Indices: 65930--66116 Score: 182
Period size: 43 Copynumber: 4.4 Consensus size: 43
65920 TATATACCAG
* * * *
65930 ACCTATTGTGGCGTTTG-T-GTCAAACACGTCGCTAAATCTCAAC
1 ACCTATTGCGGCGTTTGTTGGACAAACAC--CACTAAATATCAAC
*
65973 ACCTATTGCAGCGTTTGTTGGA-AAACACCACTAAATATCAAC
1 ACCTATTGCGGCGTTTGTTGGACAAACACCACTAAATATCAAC
* * *
66015 ACCTATTGCGGCGTTTGGTGGACAAACGCCGCTAAATATCAAC
1 ACCTATTGCGGCGTTTGTTGGACAAACACCACTAAATATCAAC
*** * * * ***
66058 ACCTATTGCGGCGTTTGTCCAACAAACGCCGCTATATATCGTT
1 ACCTATTGCGGCGTTTGTTGGACAAACACCACTAAATATCAAC
66101 ACCTATTGCGGCGTTT
1 ACCTATTGCGGCGTTT
66117 TTTGTTACCA
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
42 32 0.26
43 84 0.68
44 7 0.06
45 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
ACCTATTGCGGCGTTTGTTGGACAAACACCACTAAATATCAAC
Found at i:66731 original size:41 final size:41
Alignment explanation
Indices: 66686--66771 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
66676 ATTTGGACTA
*
66686 TCGCAATGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
1 TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
*
66727 TCGCAACGAATTTGAATGAATCGCAATGCGAACTTCGCCTG
1 TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
66768 TCGC
1 TCGC
66772 GTTGCGAATC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (41 bp):
TCGCAACGAATTGGAATGAATCGCAATGCGAACTTCGCCTG
Found at i:72005 original size:16 final size:16
Alignment explanation
Indices: 71984--72020 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
71974 TACAATTCTC
71984 GATGAGTACCACTAAT
1 GATGAGTACCACTAAT
*
72000 GATGAGTACTACTAAT
1 GATGAGTACCACTAAT
72016 GATGA
1 GATGA
72021 CCATATTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (16 bp):
GATGAGTACCACTAAT
Found at i:72840 original size:58 final size:58
Alignment explanation
Indices: 72703--72829 Score: 218
Period size: 58 Copynumber: 2.2 Consensus size: 58
72693 ATTGATTGGG
* * **
72703 GAAAATAAGAAACATAATTTGACTGAATGTTTGAAGTCTATTTTATTTTATGTAGATT
1 GAAAATAAGAAACATAATTTGACTGAAAGTTGGAAGTCTATTCCATTTTATGTAGATT
72761 GAAAATAAGAAACATAATTTGACTGAAAGTTGGAAGTCTATTCCATTTTATGTAGATT
1 GAAAATAAGAAACATAATTTGACTGAAAGTTGGAAGTCTATTCCATTTTATGTAGATT
72819 GAAAATAAGAA
1 GAAAATAAGAA
72830 GCATGGTTTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 65 1.00
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.35
Consensus pattern (58 bp):
GAAAATAAGAAACATAATTTGACTGAAAGTTGGAAGTCTATTCCATTTTATGTAGATT
Found at i:73717 original size:71 final size:72
Alignment explanation
Indices: 73642--73784 Score: 243
Period size: 72 Copynumber: 2.0 Consensus size: 72
73632 CAAAACATTT
*
73642 AAATTTAATTAAATTTCTTTATTTTAA-TTTTTAATAAACTTTATTTCAATTATGTAATTTGAAT
1 AAATTTAATTAAATTTATTTATTTTAATTTTTTAATAAACTTTATTTCAATTATGTAATTTGAAT
73706 TATTAAA
66 TATTAAA
* *
73713 AAATTTAATTATATTTATTTATTTTAATTTTTTAATAAATTTTATTTCAATTATGTAATTTGAAT
1 AAATTTAATTAAATTTATTTATTTTAATTTTTTAATAAACTTTATTTCAATTATGTAATTTGAAT
*
73778 TTTTAAA
66 TATTAAA
73785 TTTTATGTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 25 0.37
72 42 0.63
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (72 bp):
AAATTTAATTAAATTTATTTATTTTAATTTTTTAATAAACTTTATTTCAATTATGTAATTTGAAT
TATTAAA
Found at i:73781 original size:36 final size:36
Alignment explanation
Indices: 73662--73783 Score: 140
Period size: 36 Copynumber: 3.4 Consensus size: 36
73652 AAATTTCTTT
* *
73662 ATTTTAATTTTTAATAAACTTTATTTCAATTATGTA
1 ATTTGAATTTTTAATAAATTTTATTTCAATTATGTA
* * * * *
73698 ATTTGAATTATTAAAAAATTTAATTAT-ATTTAT-TT
1 ATTTGAATTTTTAATAAATTTTATT-TCAATTATGTA
*
73733 ATTTTAATTTTTTAATAAATTTTATTTCAATTATGTA
1 ATTTGAA-TTTTTAATAAATTTTATTTCAATTATGTA
73770 ATTTGAATTTTTAA
1 ATTTGAATTTTTAA
73784 ATTTTATGTA
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
35 8 0.12
36 52 0.76
37 8 0.12
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (36 bp):
ATTTGAATTTTTAATAAATTTTATTTCAATTATGTA
Found at i:73920 original size:2 final size:2
Alignment explanation
Indices: 73909--73939 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
73899 TAATCCTAAC
73909 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
73940 GTTAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:74002 original size:27 final size:27
Alignment explanation
Indices: 73966--74032 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
73956 TATTAACTTA
*
73966 TTAAATATATTTTATTATTAAGTTCCTT
1 TTAAA-ATATTTTATTATTAAGTTCATT
* **
73994 TTAAAATATTTTATTTTTATTTTCATT
1 TTAAAATATTTTATTATTAAGTTCATT
*
74021 TAAAAATATTTT
1 TTAAAATATTTT
74033 TGTTAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 29 0.85
28 5 0.15
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (27 bp):
TTAAAATATTTTATTATTAAGTTCATT
Found at i:77054 original size:983 final size:982
Alignment explanation
Indices: 75151--77115 Score: 3689
Period size: 983 Copynumber: 2.0 Consensus size: 982
75141 TTTTAATTTT
75151 ATAAACGTATGGTCACTCTTTAAAAAAATTTAATTCATAGTTGTATATGCTCATTTTTGTCCGGA
1 ATAAACGTATGGTCACTCTTTAAAAAAATTTAATTCATAGTTGTATATGCTCATTTTTGTCCGGA
*
75216 GGATTCGTATCCAGTACATGATACAAATTTGGACCAGTGTGAGCCCAAATCAGCCCAAAACAACA
66 GGATTCGTATCCAGTACATGATACAAATTTGGACCAGTGAGAGCCCAAATCAGCCCAAAACAACA
75281 GTGTTAATTCCAGTCTTCAATCCACGTGAAGTCCTGCAAAACAAGAACGGTTAGCAAGGGGAAAA
131 GTGTTAATTCCAGTCTTCAATCCACGTGAAGTCCTGCAAAACAAGAACGGTTAGCAAGGGGAAAA
*
75346 GTAGTGTTAGATCGTGGGAGGGATATTGAGCACTCAAGAAACTTTAAGAGTCAGTTTTAATTAAA
196 GTAGTGTTAGATCGTGGGAGGGATATTGAGCACTCAAGAAACTGTAAGAGTCAGTTTTAATTAAA
*
75411 AAAACGACTATCAATAAAGAAAAGAGAGGGAGATTACACGCAGAAAAAGAAGAAAAAAATAGAGA
261 AAAACGACTATCAATAAAGAAAAGAGAGGGAGATTACACGCAGAAAAAGAAGAAAAAAACAGAGA
*
75476 TATATCAGCAATCGAATCAGCCATTACGAGGGGAAAACGAGATGAACCAGAGATGATTTTTTTTT
326 TATATCAGCAACCGAATCAGCCATTACGAGGGGAAAACGAGATGAACCAGAGATGATTTTTTTTT
*
75541 GAAAAGGCAATTAACTGATTGAACAAAAAAGGAAAATCGACCCCACTGATTCTTTGTTTTTAGAG
391 GAAAAGGCAATTAACTGATTGAACAAAAAAGGAAAACCGACCCCACTGATTCTTTGTTTTTAGAG
*
75606 AGAAAAGCAACGAACGAAAAAACGTTGTACAGAGGTATTTTCCTCCTGTTTGAAGATCAAAGGAA
456 AGAAAAGCAACGAACGAAAAAACGTTGTACAGAGGTATTTTCCTCCTGTTTGAAGATCAAAAGAA
75671 ACAATCCCATTTTTCATTGAATCAAAGCAATGCACAGAATCAAATAGGGTGCTTATTTTTCTAAT
521 ACAATCCCATTTTTCATTGAATCAAAGCAATGCACAGAATCAAATAGGGTGCTTATTTTTCTAAT
*
75736 TTCCATTCTCGCTTTCATAATTTTCTTGTGTGTCCATATGTTTTGAACCAAAACCAAGTCATAAT
586 TTCCATTCTCGCTTTCATAATTTTCTTGTGTGTCCATATGTTTTGAACCAAAACCAAGTCAGAAT
*
75801 CATAAAGGAGATAGTTTAAACGTTTACCTTAGTTGTCTTGTTTTGCCTCCTAGTCGTTCGAGTCT
651 CATAAAGGAGATAGTTTAAACGTTTACCTTAGTTGTCTCGTTTTGCCTCCTAGTCGTTCGAGTCT
75866 ACACTGTCAAAATAAAGGGGTCGTGTTAATTGAAAATAGGTTCATTATAAAATAAAAAAAAGAGG
716 ACACTGTCAAAATAAAGGGGTCGTGTTAATTGAAAATAGGTTCATTATAAAATAAAAAAAAGAGG
* *
75931 GTCTTGATAGTTTACCTTATGATGCTTCGGGGTTTGGAGTCGAACTTGTCGGCTTTAGAAGTTAG
781 GTCTTGATAGTTTACCTTATGATGATTCGGGGTTTGGAGTCGAACTTGTCGACTTTAGAAGTTAG
75996 GGGTCGATTTGGTGAGTCTTAGTCTCGGGTTAGTTGTCTAGAGAGAGAACCAAGGGACTTGGGTT
846 GGGTCGATTTGGTGAGTCTTAGTCTCGGGTTAGTTGTCTAGAGAGAGAACCAAGGGACTTGGGTT
* *
76061 GGTTTAGGGCTTTACCCGGTGGTTGAACGGCGGTCGTTTGGTGTGTAAAAAGCCTGGTCGAGAGA
911 GGTTTAGGGCTTTACCCGGTGGTTGAACGACGGTCGTTTGGTGTGTAAAAAGCCTGGCCGAGAGA
76126 TGGATAG
976 TGGATAG
*
76133 ATAAACGTATGGTCACTCTTTAAAAAAATTTAATTCATAGTTGTATATGCTCATTTTTGTCTGGA
1 ATAAACGTATGGTCACTCTTTAAAAAAATTTAATTCATAGTTGTATATGCTCATTTTTGTCCGGA
*
76198 GGATTCGTATCCAGTACATGATACAAATTTGGACCAGTGAGAGCCCAAATCAGCCCAAAACAGCA
66 GGATTCGTATCCAGTACATGATACAAATTTGGACCAGTGAGAGCCCAAATCAGCCCAAAACAACA
76263 GTGTTAATTCCAGTCTTCAATCCACGTGAAGTCCTGCAAAACAAGAACGGTTAGCAAGGGGAAAA
131 GTGTTAATTCCAGTCTTCAATCCACGTGAAGTCCTGCAAAACAAGAACGGTTAGCAAGGGGAAAA
76328 GTAGTGTTAGATCGTGGGAGGGATATTGAGCACTCAAGAAACTGTAAGAGTCAGTTTTAATTAAA
196 GTAGTGTTAGATCGTGGGAGGGATATTGAGCACTCAAGAAACTGTAAGAGTCAGTTTTAATTAAA
* *
76393 AAAATGACTATCAATAAAGAAAAGAGGGGGAGATTACACGCAGAAAAAGAAGAAAAAAAACAGAG
261 AAAACGACTATCAATAAAGAAAAGAGAGGGAGATTACACGCAGAAAAAGAAG-AAAAAAACAGAG
76458 ATATATCAGCAACCGAATCAGCCATTACGAGGGGAAAACGAGATGAACCAGAGATGATTTTTTTT
325 ATATATCAGCAACCGAATCAGCCATTACGAGGGGAAAACGAGATGAACCAGAGATGATTTTTTTT
76523 TGAAAAGGCAATTAACTGATTGAACAAAAAAGGAAAACCGACCCCACTGATTCTTTGTTTTTAGA
390 TGAAAAGGCAATTAACTGATTGAACAAAAAAGGAAAACCGACCCCACTGATTCTTTGTTTTTAGA
* *
76588 GAGAAAAGCAACGAATGAAAAAACGTTGTACATAGGTATTTTCCTCCTGTTTGAAGATCAAAAGA
455 GAGAAAAGCAACGAACGAAAAAACGTTGTACAGAGGTATTTTCCTCCTGTTTGAAGATCAAAAGA
76653 AACAATCCCATTTTTCATTGAATCAAAGCAATGCACAGAATCAAATAGGGTGCTTATTTTTCTAA
520 AACAATCCCATTTTTCATTGAATCAAAGCAATGCACAGAATCAAATAGGGTGCTTATTTTTCTAA
*
76718 TTTCCATTCTCGCTTTCATAATTTTCTTGTGTGTCCATGTGTTTTGAACCAAAACCAAGTCAGAA
585 TTTCCATTCTCGCTTTCATAATTTTCTTGTGTGTCCATATGTTTTGAACCAAAACCAAGTCAGAA
76783 TCATAAAGGAGATAGTTTAAACGTTTACCTTAGTTGTCTCGTTTTGCCTCCTAGTCGTTCGAGTC
650 TCATAAAGGAGATAGTTTAAACGTTTACCTTAGTTGTCTCGTTTTGCCTCCTAGTCGTTCGAGTC
* *
76848 TACACTGTCAAAATAAAGGGGTCGTGTTAATTGGAAATAGGTTCATTATAAAATAAAAAGAAGAG
715 TACACTGTCAAAATAAAGGGGTCGTGTTAATTGAAAATAGGTTCATTATAAAATAAAAAAAAGAG
* *
76913 GGTTTTGATAGTTTACCTTATGAT-ATGTCGGGGTTTGGAGTTGAACTTGTCGACTTTAGAAGTT
780 GGTCTTGATAGTTTACCTTATGATGAT-TCGGGGTTTGGAGTCGAACTTGTCGACTTTAGAAGTT
76977 AGGGGTCGATTTGGTGAGTCTTAGTCTCGGGTTAGTTGTCTAGAGAGAGAACCAAGGGACTTGGG
844 AGGGGTCGATTTGGTGAGTCTTAGTCTCGGGTTAGTTGTCTAGAGAGAGAACCAAGGGACTTGGG
*
77042 TTGGTTTAGGGCTTTACCTGGTGGTTGAACGACGGTCGTTTGGTGTGTAAAAAGCCTGGCCGAGA
909 TTGGTTTAGGGCTTTACCCGGTGGTTGAACGACGGTCGTTTGGTGTGTAAAAAGCCTGGCCGAGA
77107 GATGGATAG
974 GATGGATAG
77116 GGTTGGTGAG
Statistics
Matches: 957, Mismatches: 24, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
982 307 0.32
983 650 0.68
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (982 bp):
ATAAACGTATGGTCACTCTTTAAAAAAATTTAATTCATAGTTGTATATGCTCATTTTTGTCCGGA
GGATTCGTATCCAGTACATGATACAAATTTGGACCAGTGAGAGCCCAAATCAGCCCAAAACAACA
GTGTTAATTCCAGTCTTCAATCCACGTGAAGTCCTGCAAAACAAGAACGGTTAGCAAGGGGAAAA
GTAGTGTTAGATCGTGGGAGGGATATTGAGCACTCAAGAAACTGTAAGAGTCAGTTTTAATTAAA
AAAACGACTATCAATAAAGAAAAGAGAGGGAGATTACACGCAGAAAAAGAAGAAAAAAACAGAGA
TATATCAGCAACCGAATCAGCCATTACGAGGGGAAAACGAGATGAACCAGAGATGATTTTTTTTT
GAAAAGGCAATTAACTGATTGAACAAAAAAGGAAAACCGACCCCACTGATTCTTTGTTTTTAGAG
AGAAAAGCAACGAACGAAAAAACGTTGTACAGAGGTATTTTCCTCCTGTTTGAAGATCAAAAGAA
ACAATCCCATTTTTCATTGAATCAAAGCAATGCACAGAATCAAATAGGGTGCTTATTTTTCTAAT
TTCCATTCTCGCTTTCATAATTTTCTTGTGTGTCCATATGTTTTGAACCAAAACCAAGTCAGAAT
CATAAAGGAGATAGTTTAAACGTTTACCTTAGTTGTCTCGTTTTGCCTCCTAGTCGTTCGAGTCT
ACACTGTCAAAATAAAGGGGTCGTGTTAATTGAAAATAGGTTCATTATAAAATAAAAAAAAGAGG
GTCTTGATAGTTTACCTTATGATGATTCGGGGTTTGGAGTCGAACTTGTCGACTTTAGAAGTTAG
GGGTCGATTTGGTGAGTCTTAGTCTCGGGTTAGTTGTCTAGAGAGAGAACCAAGGGACTTGGGTT
GGTTTAGGGCTTTACCCGGTGGTTGAACGACGGTCGTTTGGTGTGTAAAAAGCCTGGCCGAGAGA
TGGATAG
Found at i:78764 original size:27 final size:27
Alignment explanation
Indices: 78734--78791 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
78724 TTTGTTTTAA
78734 TTAAGATATGATCATTTTCGTTTCATT
1 TTAAGATATGATCATTTTCGTTTCATT
*
78761 TTAAGATGTGATCATTTTCGTTTCATT
1 TTAAGATATGATCATTTTCGTTTCATT
78788 TTAA
1 TTAA
78792 TTAATATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.52
Consensus pattern (27 bp):
TTAAGATATGATCATTTTCGTTTCATT
Found at i:81395 original size:12 final size:12
Alignment explanation
Indices: 81378--81418 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
81368 CTTAATTGCG
*
81378 AAAATTAAAATT
1 AAAATTAAATTT
81390 AAAATTTAAATTT
1 AAAA-TTAAATTT
*
81403 AAATTTAAATTT
1 AAAATTAAATTT
81415 AAAA
1 AAAA
81419 ATCCGATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATTAAATTT
Found at i:81406 original size:18 final size:18
Alignment explanation
Indices: 81379--81417 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
81369 TTAATTGCGA
81379 AAATTAAAATTAAAATTT
1 AAATTAAAATTAAAATTT
* *
81397 AAATTTAAATTTAAATTT
1 AAATTAAAATTAAAATTT
81415 AAA
1 AAA
81418 AATCCGATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATTAAAATTAAAATTT
Found at i:81512 original size:8 final size:8
Alignment explanation
Indices: 81492--81599 Score: 66
Period size: 8 Copynumber: 13.4 Consensus size: 8
81482 TTAGATTGTA
81492 AAATAAA-
1 AAATAAAT
81499 AAATAAAT
1 AAATAAAT
*
81507 AAATAAAA
1 AAATAAAT
*
81515 AAATATGAAA
1 AAATA--AAT
*
81525 AAATAAAA
1 AAATAAAT
81533 AAATAAA-
1 AAATAAAT
81540 AAA-AATAT
1 AAATAA-AT
*
81548 TAATATAAT
1 AAATA-AAT
81557 -AAT-AAT
1 AAATAAAT
81563 -AATAAAT
1 AAATAAAT
81570 AAATAAAAT
1 AAAT-AAAT
*
81579 AGATAAAT
1 AAATAAAT
81587 AAAGATAAAT
1 -AA-ATAAAT
81597 AAA
1 AAA
81600 ATTAAGTAAA
Statistics
Matches: 85, Mismatches: 4, Indels: 23
0.76 0.04 0.21
Matches are distributed among these distances:
6 8 0.09
7 14 0.16
8 35 0.41
9 13 0.15
10 15 0.18
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (8 bp):
AAATAAAT
Found at i:81528 original size:18 final size:16
Alignment explanation
Indices: 81491--81629 Score: 75
Period size: 18 Copynumber: 7.9 Consensus size: 16
81481 ATTAGATTGT
81491 AAAAT-AAAAAATAAA
1 AAAATAAAAAAATAAA
*
81506 TAAATAAAAAAATATGAA
1 AAAATAAAAAAATA--AA
81524 AAAATAAAAAAATAAAA
1 AAAATAAAAAAAT-AAA
*
81541 AAAATATTAATATAATAATA
1 AAAATA--AA-AAAATAA-A
* *
81561 ATAATAAATAAATAAA
1 AAAATAAAAAAATAAA
*
81577 ATAGATAAATAAAGATAAA
1 A-AAATAAA-AAA-ATAAA
*
81596 TAAAATTAAGTAAAAA-GAA
1 -AAAA-TAA--AAAAATAAA
*
81615 AAAATAATAAAATAA
1 AAAATAAAAAAATAA
81630 TGAAAAAAGG
Statistics
Matches: 95, Mismatches: 13, Indels: 31
0.68 0.09 0.22
Matches are distributed among these distances:
15 8 0.08
16 11 0.12
17 21 0.22
18 22 0.23
19 14 0.15
20 15 0.16
21 3 0.03
22 1 0.01
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.22
Consensus pattern (16 bp):
AAAATAAAAAAATAAA
Found at i:81536 original size:41 final size:43
Alignment explanation
Indices: 81490--81600 Score: 113
Period size: 41 Copynumber: 2.6 Consensus size: 43
81480 TATTAGATTG
81490 TAAAATAAAAAATAA-ATAAATAAAAAAAT-ATGAAAAAATAAA
1 TAAAATAAAAAATAAGATAAATAAAAAAATAAT-AAAAAATAAA
* * * * *
81532 -AAAATAAAAAA-AATATTAATATAATAATAATAATAAATAAA
1 TAAAATAAAAAATAAGATAAATAAAAAAATAATAAAAAATAAA
*
81573 TAAAATAGATAAATAAAGATAAATAAAA
1 TAAAATA-AAAAAT-AAGATAAATAAAA
81601 TTAAGTAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
40 2 0.04
41 31 0.56
42 8 0.15
43 4 0.07
45 10 0.18
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (43 bp):
TAAAATAAAAAATAAGATAAATAAAAAAATAATAAAAAATAAA
Found at i:81553 original size:33 final size:32
Alignment explanation
Indices: 81490--81629 Score: 92
Period size: 33 Copynumber: 4.2 Consensus size: 32
81480 TATTAGATTG
81490 TAAAATAAAAAATAAATAAATAA-AAAAATATGAA
1 TAAAATAAAAAATAAA-AAA-AATAAAAATAT-AA
**
81524 -AAAATAAAAAAATAAAAAAAATATTAATATAA
1 TAAAAT-AAAAAATAAAAAAAATAAAAATATAA
* *
81556 TAATAATAATAAATAAATAAAATAGATAAATA-AA
1 TAA-AATAAAAAATAAAAAAAATA-A-AAATATAA
* * * *
81590 GATAAAT-AAAATTAAGTAAAAAGAAAAA-ATAA
1 TA-AAATAAAAAATAA-AAAAAATAAAAATATAA
81622 TAAAATAA
1 TAAAATAA
81630 TGAAAAAAGG
Statistics
Matches: 83, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
31 5 0.06
32 11 0.13
33 38 0.46
34 24 0.29
35 5 0.06
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (32 bp):
TAAAATAAAAAATAAAAAAAATAAAAATATAA
Found at i:81635 original size:9 final size:8
Alignment explanation
Indices: 81490--81635 Score: 63
Period size: 8 Copynumber: 17.6 Consensus size: 8
81480 TATTAGATTG
81490 TAAAATAA
1 TAAAATAA
81498 -AAAATAA
1 TAAAATAA
81505 -ATAAATAA
1 TA-AAATAA
*
81513 AAAAATATGA
1 TAAAATA--A
*
81523 AAAAATAA
1 TAAAATAA
*
81531 AAAAATAAA
1 TAAAAT-AA
* *
81540 AAAAATAT
1 TAAAATAA
*
81548 TAATATAA
1 TAAAATAA
81556 TAATAATAA
1 TAA-AATAA
81565 T-AAATAAA
1 TAAAAT-AA
81573 TAAAATAGA
1 TAAAATA-A
81582 T-AAAT-A
1 TAAAATAA
*
81588 -AAGATAAA
1 TAAAAT-AA
81596 TAAAATTAA
1 TAAAA-TAA
81605 GTAAAA-AGA
1 -TAAAATA-A
*
81614 AAAAATAA
1 TAAAATAA
81622 TAAAATAA
1 TAAAATAA
81630 TGAAAA
1 T-AAAA
81636 AAGGTTAAAT
Statistics
Matches: 111, Mismatches: 9, Indels: 35
0.72 0.06 0.23
Matches are distributed among these distances:
6 4 0.04
7 11 0.10
8 51 0.46
9 31 0.28
10 14 0.13
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (8 bp):
TAAAATAA
Found at i:82229 original size:20 final size:20
Alignment explanation
Indices: 82204--82296 Score: 96
Period size: 21 Copynumber: 4.5 Consensus size: 20
82194 TTTTCCCAAT
82204 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
82224 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
82244 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
* ** *
82265 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
82286 TCGCAATGCGA
1 TCGCAATGCGA
82297 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:82246 original size:41 final size:41
Alignment explanation
Indices: 82201--82296 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
82191 CGATTTTCCC
82201 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
82242 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
82283 AAATCGCAATGCGA
1 AATTCGCAATGCGA
82297 TACTGACTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.19
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
Found at i:82250 original size:21 final size:20
Alignment explanation
Indices: 82204--82296 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
82194 TTTTCCCAAT
*
82204 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
82224 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
82244 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
* **
82265 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
82286 TCGCAATGCGA
1 TCGCAATGCGA
82297 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.50
21 29 0.50
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:82310 original size:20 final size:20
Alignment explanation
Indices: 82285--82379 Score: 73
Period size: 20 Copynumber: 4.7 Consensus size: 20
82275 AATTGGGAAA
*
82285 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
82305 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* * *
82326 ATCACAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
* *
82346 GTCGCAACACGATACTGACT
1 ATCGCAACGCGATACTGACT
*
82366 TTCGCAACGCGATA
1 ATCGCAACGCGATA
82380 ATACATAATC
Statistics
Matches: 56, Mismatches: 18, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
20 43 0.77
21 13 0.23
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:84223 original size:18 final size:18
Alignment explanation
Indices: 84202--84246 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
84192 TCCACTTCGG
*
84202 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
* *
84220 GAGCTATCACCTCACCTA
1 GAGCCATCACCTCACCCA
84238 GAGCCATCA
1 GAGCCATCA
84247 TCTGATCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.42, G:0.16, T:0.16
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:84753 original size:20 final size:19
Alignment explanation
Indices: 84730--84849 Score: 66
Period size: 18 Copynumber: 6.9 Consensus size: 19
84720 CGCAACATGA
*
84730 AAATGATTATCGCAACGCGG
1 AAATGAATATCGCAACGC-G
** *
84750 AAATGGCTATCGCAATGCG
1 AAATGAATATCGCAACGCG
*
84769 AAATGAAAATCGCAA--CG
1 AAATGAATATCGCAACGCG
* * *
84786 ACA--AA-AGCGCAACGTG
1 AAATGAATATCGCAACGCG
84802 AAATGAA-ATCGCAA--CG
1 AAATGAATATCGCAACGCG
*
84818 ACA--AA-ATCGCAACGCG
1 AAATGAATATCGCAACGCG
84834 AAATGAA-ATCGCAACG
1 AAATGAATATCGCAACG
84850 ACAAAATCGC
Statistics
Matches: 78, Mismatches: 14, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
14 15 0.19
15 2 0.03
16 10 0.13
17 4 0.05
18 19 0.24
19 13 0.17
20 15 0.19
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.13
Consensus pattern (19 bp):
AAATGAATATCGCAACGCG
Found at i:84796 original size:14 final size:14
Alignment explanation
Indices: 84774--84863 Score: 81
Period size: 14 Copynumber: 5.9 Consensus size: 14
84764 ATGCGAAATG
84774 AAAATCGCAACGAC
1 AAAATCGCAACGAC
* *
84788 AAAAGCGCAACGTGAA
1 AAAATCGCAAC--GAC
84804 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
*
84820 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
84836 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
84852 AAAATCGCAACG
1 AAAATCGCAACG
84864 CGAAACACAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
14 30 0.48
16 14 0.23
18 18 0.29
ACGTcount: A:0.48, C:0.24, G:0.19, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:84816 original size:18 final size:17
Alignment explanation
Indices: 84758--84849 Score: 70
Period size: 18 Copynumber: 5.5 Consensus size: 17
84748 GGAAATGGCT
*
84758 ATCGCAATGCGAAATGAAA
1 ATCGCAACG-GAAATG-AA
*
84777 ATCGCAAC-GACA--AA
1 ATCGCAACGGAAATGAA
*
84791 AGCGCAACGTGAAATGAA
1 ATCGCAACG-GAAATGAA
*
84809 ATCGCAAC-GACA--AA
1 ATCGCAACGGAAATGAA
84823 ATCGCAACGCGAAATGAA
1 ATCGCAACG-GAAATGAA
84841 ATCGCAACG
1 ATCGCAACG
84850 ACAAAATCGC
Statistics
Matches: 58, Mismatches: 7, Indels: 17
0.71 0.09 0.21
Matches are distributed among these distances:
14 19 0.33
16 9 0.16
17 3 0.05
18 20 0.34
19 7 0.12
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (17 bp):
ATCGCAACGGAAATGAA
Found at i:84816 original size:32 final size:32
Alignment explanation
Indices: 84758--84868 Score: 186
Period size: 32 Copynumber: 3.4 Consensus size: 32
84748 GGAAATGGCT
*
84758 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
* *
84791 AGCGCAACGTGAAATGAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAATCGCAACGACAAA
84823 ATCGCAACGCGAAATGAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAATCGCAACGACAAA
84855 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
84869 CACAAATCGC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
32 60 0.82
33 13 0.18
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (32 bp):
ATCGCAACGCGAAATGAAATCGCAACGACAAA
Found at i:84897 original size:19 final size:19
Alignment explanation
Indices: 84875--84996 Score: 101
Period size: 19 Copynumber: 6.6 Consensus size: 19
84865 GAAACACAAA
*
84875 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
84894 TCGCGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
84910 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* ***
84927 TCGCATTGCGATAGCCATT
1 TCGCGTTGCGATTTTCATT
**
84946 TCCGCGTTGCGATAGTCATT
1 T-CGCGTTGCGATTTTCATT
*
84966 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
84986 TCGTGTTGCGA
1 TCGCGTTGCGA
84997 AAGTAAACTA
Statistics
Matches: 83, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
14 8 0.10
15 3 0.04
16 2 0.02
17 2 0.02
18 3 0.04
19 36 0.43
20 29 0.35
ACGTcount: A:0.14, C:0.20, G:0.24, T:0.42
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:84957 original size:20 final size:19
Alignment explanation
Indices: 84923--84977 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
84913 TTGCGATTTT
*
84923 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
84942 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
84962 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
84978 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:86988 original size:14 final size:15
Alignment explanation
Indices: 86969--87045 Score: 59
Period size: 14 Copynumber: 4.7 Consensus size: 15
86959 CGAAATGGCT
86969 ATCGCAA-CGAGAAA
1 ATCGCAAGCGAGAAA
*
86983 ATCGCAATGCGAAATGAA
1 ATCGCAA-GCGAGA--AA
87001 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCG--A-GAAA
87020 ATCGCAA-CGAGAAA
1 ATCGCAAGCGAGAAA
87034 ATCGCAATGCGA
1 ATCGCAA-GCGA
87046 TTTTCATTTC
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
14 18 0.35
15 1 0.02
16 7 0.13
17 2 0.04
18 13 0.25
19 9 0.17
20 1 0.02
21 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.13
Consensus pattern (15 bp):
ATCGCAAGCGAGAAA
Found at i:87001 original size:19 final size:19
Alignment explanation
Indices: 86979--87045 Score: 92
Period size: 18 Copynumber: 3.8 Consensus size: 19
86969 ATCGCAACGA
86979 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
86998 G-AAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
87016 GAAAATCGCAA--CG--A-
1 GAAAATCGCAATGCGAAAT
87030 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
87046 TTTTCATTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
14 11 0.25
15 1 0.02
16 2 0.05
17 2 0.05
18 18 0.41
19 10 0.23
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:88168 original size:24 final size:24
Alignment explanation
Indices: 88140--88207 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
88130 GTGAGTACTA
** *
88140 GTCAATATTCGAAATTTGATCTTG
1 GTCAATACCCGAAATTTGATATTG
* *
88164 GTCAATACCCGGACTTTGATATTG
1 GTCAATACCCGAAATTTGATATTG
* *
88188 GTCAATACACGAATTTTGAT
1 GTCAATACCCGAAATTTGAT
88208 GATGTTTCAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (24 bp):
GTCAATACCCGAAATTTGATATTG
Found at i:88399 original size:12 final size:12
Alignment explanation
Indices: 88382--88406 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
88372 ATATAATCCT
88382 GAAGAAGAAAAA
1 GAAGAAGAAAAA
88394 GAAGAAGAAAAA
1 GAAGAAGAAAAA
88406 G
1 G
88407 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:90721 original size:19 final size:19
Alignment explanation
Indices: 90699--90763 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
90689 GGAAATTACT
90699 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
90718 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
90732 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
90751 ATCGCAACGCGAA
1 ATCGCAATGCGAA
90764 TTTAATTTCG
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
14 9 0.25
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 21 0.58
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:90722 original size:39 final size:33
Alignment explanation
Indices: 90699--90761 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
90689 GGAAATTACT
*
90699 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGCGGGA
90732 ATCGCAATGCGAAATGAAAATCGCAACGCG
1 ATCGCAATGCGAAATGAAAATCGCAACGCG
90762 AATTTAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.41, C:0.21, G:0.25, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGCGGGA
Found at i:90781 original size:19 final size:20
Alignment explanation
Indices: 90759--90801 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
90749 AAATCGCAAC
90759 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
90778 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
90798 GCGA
1 GCGA
90802 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:90786 original size:14 final size:14
Alignment explanation
Indices: 90787--90820 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
90777 TGCGATTTTC
90787 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
90801 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
90815 ATTTTC
1 ATTTTC
90821 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:90961 original size:14 final size:14
Alignment explanation
Indices: 90942--90978 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
90932 CATCAATTAA
90942 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
90956 ACAAATCACCTTTT
1 ACAAATCAACTTTT
90970 ACAAATCAA
1 ACAAATCAA
90979 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:92398 original size:21 final size:21
Alignment explanation
Indices: 92332--92398 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
92322 GTGAATCGGG
*
92332 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
92352 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
92374 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
92395 CTCT
1 CTCT
92399 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:92417 original size:42 final size:41
Alignment explanation
Indices: 92332--92454 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
92322 GTGAATCGGG
* * * * *
92332 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
92374 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
92416 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
92455 CGAGTCGAGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:94535 original size:33 final size:33
Alignment explanation
Indices: 94478--94576 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
94468 ACGAGATAAT
*
94478 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
94512 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
* **
94545 GACAATCGCAACGCGAAATGAAAATCGCAACC
1 GAGAATCGCAACGCGAAATGACTATCGCAACC
94577 GCAAAATTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 45 0.76
34 14 0.24
ACGTcount: A:0.39, C:0.26, G:0.23, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:94570 original size:19 final size:19
Alignment explanation
Indices: 94453--94675 Score: 232
Period size: 19 Copynumber: 12.1 Consensus size: 19
94443 TCTTTTGGTT
*
94453 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
94472 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
94492 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
94510 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
94526 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
94544 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
94559 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
* *
94579 AAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
94598 TAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
94617 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
94636 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
94655 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
94674 GA
1 GA
94676 TTTTGGTTTC
Statistics
Matches: 173, Mismatches: 18, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
14 19 0.11
15 3 0.02
16 2 0.01
17 1 0.01
18 4 0.02
19 98 0.57
20 44 0.25
21 2 0.01
ACGTcount: A:0.44, C:0.22, G:0.21, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:94704 original size:19 final size:19
Alignment explanation
Indices: 94671--94741 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
94661 AAAATCGCAA
**
94671 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTCATTTCGCGT
*
94690 TGCGATTTTTATTTCGCGT
1 TGCGATTTTCATTTCGCGT
**
94709 TGCGATAGTCATTTCCGCGT
1 TGCGATTTTCATTT-CGCGT
*
94729 TGCGATTCTCATT
1 TGCGATTTTCATT
94742 CTCGAAACTA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
19 28 0.64
20 16 0.36
ACGTcount: A:0.11, C:0.20, G:0.24, T:0.45
Consensus pattern (19 bp):
TGCGATTTTCATTTCGCGT
Found at i:95282 original size:20 final size:20
Alignment explanation
Indices: 95254--95301 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
95244 CGCTAAGTAA
*
95254 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTAAGT
*
95274 ATCGTGTTGCGAAAGTAAGT
1 ATCGCGTTGCGAAAGTAAGT
*
95294 ATCTCGTT
1 ATCGCGTT
95302 ACAATTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTAAGT
Found at i:95366 original size:41 final size:41
Alignment explanation
Indices: 95336--95431 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
95326 ATAGTCAGTA
* * *
95336 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
* *
95377 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
95418 TCGCATTGCGAATT
1 TCGCATTGCGAATT
95432 GGGAAAATCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:95380 original size:20 final size:20
Alignment explanation
Indices: 95336--95428 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
95326 ATAGTCAGTA
* **
95336 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
95357 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
95377 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
95398 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
95418 TCGCATTGCGA
1 TCGCATTGCGA
95429 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:96447 original size:3 final size:3
Alignment explanation
Indices: 96439--96523 Score: 77
Period size: 3 Copynumber: 27.7 Consensus size: 3
96429 AGGAAAAATG
* *
96439 AAT AAT AAT AAT AAGT AGT -AT ATAT ATAT ATAT ATT AAT -AT AAT AA-
1 AAT AAT AAT AAT AA-T AAT AAT A-AT A-AT A-AT AAT AAT AAT AAT AAT
*
96485 AAT AAAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
96524 ATTCAAAACC
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
2 5 0.07
3 50 0.71
4 15 0.21
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:96580 original size:38 final size:37
Alignment explanation
Indices: 96528--96989 Score: 352
Period size: 39 Copynumber: 12.2 Consensus size: 37
96518 TAATAAATTC
* * * *
96528 AAAACCATACATTATATACATTTTCAAAACTATTTTCA
1 AAAACTATATATTATATATATTTTCAAAA-TGTTTTCA
96566 AAAACTATATATTATATATATTTTTTCAAAATGTTTTCA
1 AAAACTATATATTATATATA--TTTTCAAAATGTTTTCA
*
96605 AAAACTATAT-TATATATATTTTTTCAAAATGTTTTCA
1 AAAACTATATAT-TATATATATTTTCAAAATGTTTTCA
*
96642 AAAAC--TATA-TATATATA--TTCAAAAACGTTTTCA
1 AAAACTATATATTATATATATTTTC-AAAATGTTTTCA
* ** *
96675 AAAACTATATATTATATATGTTTT-AAAA--ACTTCC
1 AAAACTATATATTATATATATTTTCAAAATGTTTTCA
* *
96709 AAAACTATAATATATATATATATATATTCAAAATATTTTTA
1 AAAACTAT-ATAT-TATATATAT-T-TTCAAAATGTTTTCA
96750 AAAACTATATATTATATATATTTTTTCAAAATGTTTTCA
1 AAAACTATATATTATATATA--TTTTCAAAATGTTTTCA
96789 AAAACTATATA-TATATATATTTT-AAAATGTTTTC-
1 AAAACTATATATTATATATATTTTCAAAATGTTTTCA
*
96823 AAAACTATATATATATATATATATATAT-ATATATATATATATAT-A
1 AAAACTATATAT-TATATATAT-T-T-TCA-A-A-ATGT-T-T-TCA
* * *
96868 TATATA-TATATATATATATATATATTCGAAATGTTTTC-
1 -A-AAACTATATAT-TATATATATTTTCAAAATGTTTTCA
*
96906 AAAACTATATA--ATATATATTTTCGAAATTCGTTTTCTA
1 AAAACTATATATTATATATATTTTC-AAAAT-GTTTTC-A
* *
96944 AAAATTATATA-T-TATATATTTTCAAAATATATTTTCA
1 AAAACTATATATTATATATATTTTC-AAA-ATGTTTTCA
96981 AAAACTATA
1 AAAACTATA
96990 CTATATTAAT
Statistics
Matches: 350, Mismatches: 32, Indels: 85
0.75 0.07 0.18
Matches are distributed among these distances:
32 3 0.01
33 16 0.05
34 40 0.11
35 25 0.07
36 40 0.11
37 40 0.11
38 61 0.17
39 64 0.18
40 16 0.05
41 15 0.04
42 4 0.01
43 3 0.01
44 2 0.01
45 1 0.00
46 18 0.05
47 2 0.01
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (37 bp):
AAAACTATATATTATATATATTTTCAAAATGTTTTCA
Found at i:96617 original size:75 final size:72
Alignment explanation
Indices: 96538--96842 Score: 308
Period size: 77 Copynumber: 4.2 Consensus size: 72
96528 AAAACCATAC
*
96538 ATTATATACA-TTTTCAAAACTATTTTCAAAAACTATATATTATATATATTTTTTCAAAATGTTT
1 ATTATATATATTTTTCAAAA-TATTTTCAAAAACTATATA-TATATATA--TTTTCAAAATGTTT
96602 TCAAAAACTAT
62 TCAAAAACTAT
* *
96613 ATTATATATATTTTTTCAAAATGTTTTCAAAAAC--TATATATATATA--TTCAAAAACGTTTTC
1 ATTATATATA-TTTTTCAAAATATTTTCAAAAACTATATATATATATATTTTC-AAAATGTTTTC
96674 AAAAACTAT
64 AAAAACTAT
* * *
96683 A-TATTATATATGTTTT-AAAA-A-CTTCCAAAACTATAATATATATATATATATATTCAAAATA
1 ATTA-TATATAT-TTTTCAAAATATTTTCAAAAAC--T-ATATATATATATAT-T-TTCAAAATG
*
96744 TTTTTAAAAACTATAT
59 TTTTCAAAAAC--TAT
*
96760 ATTATATATATTTTTTCAAAATGTTTTCAAAAACTATATATATATATATTTT-AAAATGTTTTC-
1 ATTATATATA-TTTTTCAAAATATTTTCAAAAACTATATATATATATATTTTCAAAATGTTTTCA
96823 AAAACTAT
65 AAAACTAT
96831 ATATATATATAT
1 AT-TATATATAT
96843 ATATATATAT
Statistics
Matches: 194, Mismatches: 14, Indels: 48
0.76 0.05 0.19
Matches are distributed among these distances:
67 8 0.04
69 10 0.05
70 30 0.15
71 6 0.03
72 20 0.10
73 13 0.07
74 13 0.07
75 25 0.13
76 16 0.08
77 37 0.19
78 8 0.04
80 8 0.04
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.45
Consensus pattern (72 bp):
ATTATATATATTTTTCAAAATATTTTCAAAAACTATATATATATATATTTTCAAAATGTTTTCAA
AAACTAT
Found at i:96623 original size:37 final size:37
Alignment explanation
Indices: 96548--96842 Score: 308
Period size: 37 Copynumber: 8.0 Consensus size: 37
96538 ATTATATACA
*
96548 TTTTCAAAACTATTTTCAAAAACTATATATTATATATATT
1 TTTTCAAAA-TGTTTTCAAAAAC--TATATTATATATATT
96588 TTTTCAAAATGTTTTCAAAAACTATATTATATATATT
1 TTTTCAAAATGTTTTCAAAAACTATATTATATATATT
96625 TTTTCAAAATGTTTTCAAAAACTATA-TATATATA--
1 TTTTCAAAATGTTTTCAAAAACTATATTATATATATT
* *
96659 --TTCAAAAACGTTTTCAAAAACTATA-TATTATATATG
1 TTTTC-AAAATGTTTTCAAAAACTATATTA-TATATATT
** *
96695 TTTT-AAAA--ACTTCCAAAACTATAATATATATATATAT
1 TTTTCAAAATGTTTTCAAAAACTAT-AT-TATATATAT-T
* * *
96732 ATATTCAAAATATTTTTAAAAACTATATATTATATATATT
1 -TTTTCAAAATGTTTTCAAAAAC--TATATTATATATATT
*
96772 TTTTCAAAATGTTTTCAAAAACTATA-TATATATATA
1 TTTTCAAAATGTTTTCAAAAACTATATTATATATATT
96808 TTTT-AAAATGTTTTC-AAAACTATATATATATATAT
1 TTTTCAAAATGTTTTCAAAAACTATAT-TATATATAT
96843 ATATATATAT
Statistics
Matches: 222, Mismatches: 15, Indels: 40
0.80 0.05 0.14
Matches are distributed among these distances:
32 3 0.01
33 22 0.10
34 26 0.12
35 12 0.05
36 41 0.18
37 47 0.21
38 5 0.02
39 35 0.16
40 10 0.05
41 16 0.07
42 2 0.01
43 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.45
Consensus pattern (37 bp):
TTTTCAAAATGTTTTCAAAAACTATATTATATATATT
Found at i:96689 original size:147 final size:146
Alignment explanation
Indices: 96525--96841 Score: 417
Period size: 147 Copynumber: 2.1 Consensus size: 146
96515 TAATAATAAA
* * * *
96525 TTCAAAACCATACATTATATACATTTTCAAAACTATTTTCAAAAACTAT-ATAT-TATATATATT
1 TTCAAAACTATATATTATATACATTTT-AAAA--A-CTTCAAAAACTATAATATATATATATATA
* *
96588 TTTTCAAAATGTTTTCAAAAAC-TATATTATATATATTTTTTCAAAATGTTTTCAAAAAC-TATA
62 TATTCAAAATATTTTCAAAAACATATATTATATATATTTTTTCAAAATGTTTTCAAAAACATATA
96651 TATATATATTCAAAAACGTT
127 TATATATATTCAAAAACGTT
** *
96671 TTCAAAAACTATATATTATATATGTTTTAAAAACTTCCAAAACTATAATATATATATATATATAT
1 TTC-AAAACTATATATTATATACATTTTAAAAACTTCAAAAACTATAATATATATATATATATAT
*
96736 TCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCAAAATGTTTTCAAAAACTATATAT
65 TCAAAATATTTTCAAAAAC-ATATATTATATATATTTTTTCAAAATGTTTTCAAAAAC-ATATAT
** *
96801 ATATATATTTTAAAATGTT
128 ATATATATTCAAAAACGTT
96820 TTCAAAACTATATATATATATA
1 TTCAAAACTATATAT-TATATA
96842 TATATATATA
Statistics
Matches: 150, Mismatches: 13, Indels: 13
0.85 0.07 0.07
Matches are distributed among these distances:
143 11 0.07
144 5 0.03
145 28 0.19
146 7 0.05
147 57 0.38
148 12 0.08
149 30 0.20
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (146 bp):
TTCAAAACTATATATTATATACATTTTAAAAACTTCAAAAACTATAATATATATATATATATATT
CAAAATATTTTCAAAAACATATATTATATATATTTTTTCAAAATGTTTTCAAAAACATATATATA
TATATTCAAAAACGTT
Found at i:96835 original size:2 final size:2
Alignment explanation
Indices: 96828--96892 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
96818 TTTTCAAAAC
96828 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96870 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
96893 TCGAAATGTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:96869 original size:147 final size:148
Alignment explanation
Indices: 96571--97030 Score: 452
Period size: 147 Copynumber: 3.1 Consensus size: 148
96561 TTTCAAAAAC
* * * *
96571 TATATAT-TATATATATTTTTTCAAAATGTTTTCAAAAAC--TATATTATATATATTTTTTCAAA
1 TATATATATATATATATATATTCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCAAA
** * *
96633 ATGTTTTCAAAAAC--TATATATATATATTCAAAAACGTTTTCAAAAACTATATAT-TATATATG
66 ATGTTTTCAAAAACTATATATATATATATTTTAAAATGTTTTCAAAAACTATATATATATATATA
* * * *
96695 T-TTTAAAAACT-TCCA-AAA
131 TATATATATA-TAT--ATATA
96713 CTATAATATATATATATATATATTCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCA
1 -TAT-ATATATATATATATATATTCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCA
96778 AAATGTTTTCAAAAACTATATATATATATATTTTAAAATGTTTTC-AAAACTATATATATATATA
64 AAATGTTTTCAAAAACTATATATATATATATTTTAAAATGTTTTCAAAAACTATATATATATATA
96842 TATATATATATATATATATA
129 TATATATATATATATATATA
*
96862 TATATATATATATATATATATAT-ATATATATTCGAAATGTTTTCAAAACTATATA--ATATATA
1 TATATATATATATATATATAT-TCA-A-A-A-T----AT-TTTTAAAAACTATATATTATATATA
* * *
96924 --TTTTCGAAATTCGTTTTCTAAAAATTATATAT-TATATATTTTCAAAATATATTTTCAAAAAC
56 TTTTTTC-AAAAT-GTTTTC-AAAAACTATATATATATATATTTT--AAA-ATGTTTTCAAAAAC
96986 TATACTATAT-TA-ATATATATATATATATATATA
115 TATA-TATATATATATATATATATATATATATATA
97019 TATATATATATA
1 TATATATATATA
97031 AAGAGGAGAA
Statistics
Matches: 273, Mismatches: 16, Indels: 42
0.82 0.05 0.13
Matches are distributed among these distances:
143 3 0.01
144 4 0.01
145 28 0.10
147 56 0.21
148 18 0.07
149 36 0.13
150 7 0.03
151 1 0.00
152 5 0.02
153 4 0.01
154 23 0.08
155 14 0.05
156 18 0.07
157 40 0.15
158 11 0.04
159 5 0.02
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (148 bp):
TATATATATATATATATATATTCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCAAA
ATGTTTTCAAAAACTATATATATATATATTTTAAAATGTTTTCAAAAACTATATATATATATATA
TATATATATATATATATA
Found at i:96870 original size:145 final size:146
Alignment explanation
Indices: 96571--97030 Score: 439
Period size: 145 Copynumber: 3.1 Consensus size: 146
96561 TTTCAAAAAC
* * * *
96571 TATATAT-TATATATATTTTTTCAAAATGTTTTCAAAAAC--TATATTATATATATTTTTTCAAA
1 TATATATATATATATATATATTCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCAAA
** * *
96633 ATGTTTTCAAAAAC--TATATATATATATTCAAAAACGTTTTCAAAAACTATATAT-TATATATG
66 ATGTTTTCAAAAACTATATATATATATATTTTAAAATGTTTTCAAAAACTATATATATATATATA
* * * *
96695 T-TTTAAAAACT-TCCAAAA
131 TATATATATA-TAT---ATA
96713 CTATAATATATATATATATATATTCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCA
1 -TAT-ATATATATATATATATATTCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCA
96778 AAATGTTTTCAAAAACTATATATATATATATTTTAAAATGTTTTC-AAAACTATATATATATATA
64 AAATGTTTTCAAAAACTATATATATATATATTTTAAAATGTTTTCAAAAACTATATATATATATA
96842 TATATATATATATATATA
129 TATATATATATATATATA
* *
96860 TATATATATATATATATATATATATATATATATTCGAAATGTTTTCAAAACTATATA--ATATAT
1 TATATATATATATATATATAT-T-CA-A-A-A-T----AT-TTTTAAAAACTATATATTATATAT
* * *
96923 A--TTTTCGAAATTCGTTTTCTAAAAATTATATAT-TATATATTTTCAAAATATATTTTCAAAAA
55 ATTTTTTC-AAAAT-GTTTTC-AAAAACTATATATATATATATTTT--AAA-ATGTTTTCAAAAA
96985 CTATACTATAT-TA-ATATATATATATATATATA
114 CTATA-TATATATATATATATATATATATATATA
97017 TATATATATATATA
1 TATATATATATATA
97031 AAGAGGAGAA
Statistics
Matches: 272, Mismatches: 17, Indels: 42
0.82 0.05 0.13
Matches are distributed among these distances:
143 3 0.01
144 4 0.01
145 46 0.17
146 4 0.01
147 40 0.15
148 13 0.05
149 34 0.12
150 7 0.03
151 1 0.00
152 5 0.02
153 4 0.01
154 23 0.08
155 14 0.05
156 18 0.07
157 40 0.15
158 11 0.04
159 5 0.02
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (146 bp):
TATATATATATATATATATATTCAAAATATTTTTAAAAACTATATATTATATATATTTTTTCAAA
ATGTTTTCAAAAACTATATATATATATATTTTAAAATGTTTTCAAAAACTATATATATATATATA
TATATATATATATATA
Found at i:96921 original size:36 final size:37
Alignment explanation
Indices: 96876--96989 Score: 128
Period size: 38 Copynumber: 3.1 Consensus size: 37
96866 TATATATATA
*
96876 TATATATATATATATATTCGAAA-T-GTTTTC-AAAAC
1 TATATA-ATATATATTTTCGAAATTCGTTTTCAAAAAC
*
96911 TATATAATATATATTTTCGAAATTCGTTTTCTAAAAAT
1 TATATAATATATATTTTCGAAATTCGTTTTC-AAAAAC
* * *
96949 TATATATTATATATTTTCAAAATAT-ATTTTCAAAAAC
1 TATATAATATATATTTTCGAAAT-TCGTTTTCAAAAAC
96986 TATA
1 TATA
96990 CTATATTAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
34 15 0.22
35 7 0.10
36 6 0.09
37 9 0.13
38 30 0.44
39 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.46
Consensus pattern (37 bp):
TATATAATATATATTTTCGAAATTCGTTTTCAAAAAC
Found at i:96955 original size:40 final size:38
Alignment explanation
Indices: 96874--97005 Score: 114
Period size: 38 Copynumber: 3.4 Consensus size: 38
96864 TATATATATA
*
96874 TATATATATATATATATATTCGAAA-TGTTTTC-AAAA-
1 TATATATA-ATATATATTTTCGAAATTGTTTTCAAAAAT
*
96910 -CTATATAATATATATTTTCGAAATTCGTTTTCTAAAAAT
1 TATATATAATATATATTTTCGAAATT-GTTTTC-AAAAAT
* *
96949 TATATAT--TATATATTTTCAAAATATATTTTCAAAAACT
1 TATATATAATATATATTTTCGAAAT-TGTTTTCAAAAA-T
96987 ATACTATATTAATATATAT
1 -TA-TATA-TAATATATAT
97006 ATATATATAT
Statistics
Matches: 78, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
34 15 0.19
35 7 0.09
36 6 0.08
37 5 0.06
38 25 0.32
39 3 0.04
40 9 0.12
41 1 0.01
43 7 0.09
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (38 bp):
TATATATAATATATATTTTCGAAATTGTTTTCAAAAAT
Found at i:96989 original size:15 final size:13
Alignment explanation
Indices: 96957--96983 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96947 ATTATATATT
96957 ATATATTTTCAAA
1 ATATATTTTCAAA
96970 ATATATTTTCAAA
1 ATATATTTTCAAA
96983 A
1 A
96984 ACTATACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATATTTTCAAA
Found at i:97005 original size:2 final size:2
Alignment explanation
Indices: 96986--97030 Score: 67
Period size: 2 Copynumber: 23.0 Consensus size: 2
96976 TTTCAAAAAC
96986 TA TA CTA TA T- TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97027 TA TA
1 TA TA
97031 AAGAGGAGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
1 2 0.05
2 36 0.90
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:97790 original size:85 final size:85
Alignment explanation
Indices: 97636--97958 Score: 396
Period size: 85 Copynumber: 3.8 Consensus size: 85
97626 ATATGTCATC
* * ** *
97636 GAGCTGAATGGAATTGAACTCGACA-GTTTTTGTTGACAGATAGCCCTTCTCACTTTGAGCAATG
1 GAGCTGAATGGAATCGAACTCGA-AGGTTTTTGTTGACAGATAGCCCTTCTCGCCCTGAGCTATG
* * * *
97700 TTGTAAATTTAATACGCCTTT
65 CTGTAAATTTGATATGCCCTT
* * *
97721 GAGCTGAATGGAATTGAACTCGAAGGTTTTTGTTGACAGATAGTCCTTCTCGCCCTAAGCTATGC
1 GAGCTGAATGGAATCGAACTCGAAGGTTTTTGTTGACAGATAGCCCTTCTCGCCCTGAGCTATGC
97786 TGTAAATTTGATATGCCCTT
66 TGTAAATTTGATATGCCCTT
* * * * * * *
97806 GAGATTAATGTAATCGAACTCGTAGGTTTTTATTGACAGATAGTCCTTCTCTCCCTGAGCTATGC
1 GAGCTGAATGGAATCGAACTCGAAGGTTTTTGTTGACAGATAGCCCTTCTCGCCCTGAGCTATGC
97871 TGTAAATTTGATATGCCCTT
66 TGTAAATTTGATATGCCCTT
* * * * * *
97891 GAGCTGAATGTAATCAAACTTGAAGGTTTTTTGCTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAATGGAATCGAACTCGAAGG-TTTTTGTTGACAGATAGCCCTTCTCGCCCTGAGCTATG
97956 CTG
65 CTG
97959 CGAATAGTTC
Statistics
Matches: 207, Mismatches: 29, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
84 1 0.00
85 171 0.83
86 35 0.17
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (85 bp):
GAGCTGAATGGAATCGAACTCGAAGGTTTTTGTTGACAGATAGCCCTTCTCGCCCTGAGCTATGC
TGTAAATTTGATATGCCCTT
Found at i:99320 original size:20 final size:20
Alignment explanation
Indices: 99295--99334 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
99285 AAGTCAGGGC
*
99295 ATTTAACCGATTGCTCTAGA
1 ATTTAACCAATTGCTCTAGA
99315 ATTTAACCAATTGCTCTAGA
1 ATTTAACCAATTGCTCTAGA
99335 GGGACAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
ATTTAACCAATTGCTCTAGA
Found at i:99460 original size:99 final size:99
Alignment explanation
Indices: 99346--99547 Score: 305
Period size: 99 Copynumber: 2.0 Consensus size: 99
99336 GGACAACTCA
* * * *
99346 ATATTATAATCACCTTTATCAAGCTAGCTTAATCTTCTCCATAAAGCCGGGGCGTTTAACCAATT
1 ATATTATAATCACCTTTATCAAGCTAGCTGAATATTATCCATAAAGCCAGGGCGTTTAACCAATT
*
99411 GCTTTAGAGCGACAACTCAAGCTTTATTGTATAG
66 GCTCTAGAGCGACAACTCAAGCTTTATTGTATAG
* * **
99445 ATATTATAATTACCTTTATCAGGCTAGCTGAATATTATCCATAAAGTTAGGGCGTTTAACCAATT
1 ATATTATAATCACCTTTATCAAGCTAGCTGAATATTATCCATAAAGCCAGGGCGTTTAACCAATT
* *
99510 GCTCTAGAGGGACAACTCAAGCTTTATTGTATAT
66 GCTCTAGAGCGACAACTCAAGCTTTATTGTATAG
99544 ATAT
1 ATAT
99548 AATATTATAA
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 92 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (99 bp):
ATATTATAATCACCTTTATCAAGCTAGCTGAATATTATCCATAAAGCCAGGGCGTTTAACCAATT
GCTCTAGAGCGACAACTCAAGCTTTATTGTATAG
Found at i:109695 original size:14 final size:15
Alignment explanation
Indices: 109672--109724 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 15
109662 AGAATAAAAA
109672 AATATT-AATATAAT
1 AATATTAAATATAAT
*
109686 -ATATTAAATAAAAT
1 AATATTAAATATAAT
*
109700 AGATATATAAAGATAAT
1 A-ATAT-TAAATATAAT
109717 AATATTAA
1 AATATTAA
109725 GTAAAAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 5 0.16
14 7 0.22
15 3 0.09
16 8 0.25
17 9 0.28
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (15 bp):
AATATTAAATATAAT
Found at i:110989 original size:29 final size:27
Alignment explanation
Indices: 110933--110999 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 27
110923 TAAAATGAAA
110933 ATAATAATAAATAAATAAAAAGGAAAAT
1 ATAATAAT-AATAAATAAAAAGGAAAAT
* *
110961 ATGAATAATAATAAATAATAAGTATAAAT
1 AT-AATAATAATAAATAAAAAGGA-AAAT
110990 ATATATAATA
1 ATA-ATAATA
111000 TATATTATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 16 0.47
29 18 0.53
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (27 bp):
ATAATAATAATAAATAAAAAGGAAAAT
Found at i:111098 original size:2 final size:2
Alignment explanation
Indices: 111087--111127 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
111077 TATTTCAAAA
* *
111087 AT AT -T AT AT AT AT CT AT AT AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
111128 TCAAAATGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:111218 original size:73 final size:73
Alignment explanation
Indices: 111109--111266 Score: 223
Period size: 73 Copynumber: 2.2 Consensus size: 73
111099 TCTATATATT
* *
111109 TATATATATATATATATATTCAAAATGTTTTCAAAAACTATATATTATATGTTTTCAAA-ATTTT
1 TATATATATATATATATAATCAAAATGTTTTCAAAAACTATATATTATATATTTTCAAATATTTT
111173 CAAAACTA
66 CAAAACTA
* *
111181 TAATATATATATATATATAAT-AAATAT-TTTTCAAAAAACTATTTATTATATATTTTCAAATGT
1 T-ATATATATATATATATAATCAAA-ATGTTTTC-AAAAACTATATATTATATATTTTCAAATAT
111244 TTTCAAAACTA
63 TTTCAAAACTA
111255 TATATATCATAT
1 TATATAT-ATAT
111267 TCGAATGTTT
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
72 9 0.12
73 51 0.66
74 17 0.22
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.46
Consensus pattern (73 bp):
TATATATATATATATATAATCAAAATGTTTTCAAAAACTATATATTATATATTTTCAAATATTTT
CAAAACTA
Found at i:111267 original size:33 final size:33
Alignment explanation
Indices: 111215--111363 Score: 157
Period size: 33 Copynumber: 4.6 Consensus size: 33
111205 TATTTTTCAA
* *
111215 AAAACTATTTATTATATATTTTCAAATGTTTTC
1 AAAACTATATAATATATATTTTCAAATGTTTTC
*
111248 AAAACTATAT-ATATCATA--TTCGAATGTTTTC
1 AAAACTATATAATAT-ATATTTTCAAATGTTTTC
*
111279 --AACTA-ATAATATATATTTTCGAATGTTTTC
1 AAAACTATATAATATATATTTTCAAATGTTTTC
* * *
111309 AAAACTATATGATATCTATTTTCGAATACCGTTTTC
1 AAAACTATATAATATATATTTTC-AA-A-TGTTTTC
111345 AAAACTATATAATATATAT
1 AAAACTATATAATATATAT
111364 ATTTTCGAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
28 5 0.05
29 9 0.09
30 13 0.13
31 12 0.12
32 8 0.08
33 25 0.26
34 1 0.01
35 1 0.01
36 23 0.24
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.44
Consensus pattern (33 bp):
AAAACTATATAATATATATTTTCAAATGTTTTC
Found at i:111277 original size:31 final size:31
Alignment explanation
Indices: 111228--111363 Score: 136
Period size: 30 Copynumber: 4.3 Consensus size: 31
111218 ACTATTTATT
* *
111228 ATATATTTTCAAATGTTTTCAAAACTATAT-
1 ATATATATTCGAATGTTTTCAAAACTATATA
111258 ATATCATATTCGAATGTTTTC--AACTA-ATA
1 ATAT-ATATTCGAATGTTTTCAAAACTATATA
111287 ATATATATTTTCGAATGTTTTCAAAACTATATGA
1 ATATATA--TTCGAATGTTTTCAAAACTATAT-A
* *
111321 TATCTATTTTCGAATACCGTTTTCAAAACTATATA
1 -ATATATATTCGAAT---GTTTTCAAAACTATATA
111356 ATATATAT
1 ATATATAT
111364 ATTTTCGAAA
Statistics
Matches: 88, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
28 5 0.06
29 9 0.10
30 17 0.19
31 14 0.16
32 5 0.06
33 9 0.10
34 7 0.08
35 6 0.07
36 16 0.18
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (31 bp):
ATATATATTCGAATGTTTTCAAAACTATATA
Found at i:111296 original size:61 final size:66
Alignment explanation
Indices: 111216--111363 Score: 198
Period size: 61 Copynumber: 2.3 Consensus size: 66
111206 ATTTTTCAAA
* *
111216 AAACTATTTATTATATATTTTCAAATGTTTTCAAAACTATAT-ATATC-ATATTCGAAT-GTTTT
1 AAACTATATAATATATATTTTCAAATGTTTTCAAAACTATATGATATCTATATTCGAATCGTTTT
111278 C
66 C
* *
111279 -AACTA-ATAATATATATTTTCGAATGTTTTCAAAACTATATGATATCTATTTTCGAATACCGTT
1 AAACTATATAATATATATTTTCAAATGTTTTCAAAACTATATGATATCTATATTCGAAT--CGTT
111342 TTC
64 TTC
111345 AAAACTATATAATATATAT
1 -AAACTATATAATATATAT
111364 ATTTTCGAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
61 32 0.44
62 10 0.14
63 9 0.12
66 6 0.08
68 5 0.07
69 11 0.15
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (66 bp):
AAACTATATAATATATATTTTCAAATGTTTTCAAAACTATATGATATCTATATTCGAATCGTTTT
C
Found at i:111382 original size:38 final size:37
Alignment explanation
Indices: 111215--111387 Score: 132
Period size: 33 Copynumber: 5.1 Consensus size: 37
111205 TATTTTTCAA
* *
111215 AAAACTAT-TTAT-TATATATTTTCAAAT--GTTTTC
1 AAAACTATATAATATATATATTTTCGAATCCGTTTTC
*
111248 AAAACTATAT-ATAT-CATA--TTCGAAT--GTTTTC
1 AAAACTATATAATATATATATTTTCGAATCCGTTTTC
111279 --AACTA-AT-A-ATATATATTTTCGAAT--GTTTTC
1 AAAACTATATAATATATATATTTTCGAATCCGTTTTC
* *
111309 AAAACTATAT--GATATCTATTTTCGAATACCGTTTTC
1 AAAACTATATAATATATATATTTTCGAAT-CCGTTTTC
*
111345 AAAACTATATAATATATATATTTTCGAAATCCATTTTC
1 AAAACTATATAATATATATATTTTCG-AATCCGTTTTC
111383 TAAAA
1 -AAAA
111388 AATTATATTA
Statistics
Matches: 117, Mismatches: 7, Indels: 26
0.78 0.05 0.17
Matches are distributed among these distances:
27 2 0.02
28 6 0.05
29 5 0.04
30 13 0.11
31 12 0.10
32 5 0.04
33 30 0.26
34 2 0.02
36 16 0.14
38 19 0.16
39 7 0.06
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (37 bp):
AAAACTATATAATATATATATTTTCGAATCCGTTTTC
Done.