genome.fa.s4657.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004657.1 Hibiscus syriacus cultivar Beakdansim tig00010440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101312

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12382--12438	21	2.7	21	91	0	78	38	19	22	19	1.93
15835--15917	3	27.7	3	95	4	150	33	0	0	66	0.92
16198--16296	42	2.4	41	74	12	103	31	18	24	26	1.97
16315--16498	59	3.2	58	81	6	185	41	17	10	30	1.84
16355--16493	59	2.4	58	88	1	206	43	17	10	28	1.81
16526--16769	54	4.6	55	83	6	295	42	17	7	32	1.78
16552--16742	104	1.8	105	89	3	305	42	15	6	34	1.74
16727--16839	52	2.1	54	83	3	140	38	16	11	33	1.85
29259--29328	28	2.5	28	85	0	104	48	10	14	27	1.75
34163--34228	31	2.2	31	88	2	98	33	13	25	27	1.94
34861--34938	31	2.5	31	82	0	93	33	12	28	25	1.93
35650--35763	20	5.7	20	79	6	113	32	24	17	25	1.97
36318--36362	19	2.4	19	82	14	65	51	24	17	6	1.70
36358--36522	19	9.1	19	73	15	134	12	23	20	43	1.86
36358--36522	33	4.6	38	81	9	134	12	23	20	43	1.86
36412--36497	33	2.6	33	94	1	145	12	26	22	38	1.90
36476--36522	20	2.3	20	79	13	60	12	25	14	46	1.80
40003--40038	14	2.6	14	95	0	63	30	0	25	44	1.54
40163--40219	14	3.7	14	75	20	60	43	22	24	8	1.81
40145--40234	33	2.7	33	94	0	153	43	21	22	13	1.87
40145--40205	19	3.5	19	74	21	69	44	21	22	11	1.84
40230--40380	19	8.7	19	64	21	80	15	22	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40234--40360	33	3.9	32	87	8	193	14	22	19	42	1.88
40227--40359	66	2.0	66	97	0	248	16	22	19	41	1.90
44599--44647	20	2.5	20	100	0	98	42	10	22	24	1.84
47296--47989	350	2.0	353	86	3	979	45	15	11	28	1.80
49763--49807	21	2.1	22	83	4	56	48	35	6	8	1.61
63132--63163	17	1.9	17	93	6	57	6	6	34	53	1.51
63566--63620	27	2.1	25	90	6	83	72	0	0	27	0.85
63566--63609	15	3.1	15	78	15	58	70	0	0	29	0.88
63623--63907	37	7.8	36	80	8	265	43	7	2	46	1.43
63753--63851	12	8.0	12	69	17	60	46	7	1	45	1.37
63623--63913	74	4.0	72	84	8	322	44	7	2	45	1.43
64535--64945	85	4.8	85	89	1	572	26	17	21	34	1.96
64535--64938	171	2.4	170	87	1	585	25	17	21	34	1.96
68183--68391	75	2.8	76	85	2	269	24	31	22	21	1.98
74162--74201	21	1.9	21	89	0	62	25	40	25	10	1.86
76492--76588	47	2.1	47	100	0	194	43	10	14	31	1.79
76848--77031	75	2.4	75	85	0	242	25	29	22	22	1.99
78819--79779	321	3.0	319	94	0	1654	28	14	20	36	1.92
83785--84037	85	3.0	85	91	0	380	26	17	20	35	1.95
88136--88179	20	2.2	20	84	4	54	38	4	4	52	1.42
95364--95420	22	2.7	20	73	21	53	29	17	15	36	1.91
95699--95843	64	2.3	64	86	4	195	28	22	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95679--95886	64	3.2	65	81	5	183	28	21	19	30	1.97
98825--98852	12	2.3	12	100	0	56	42	0	7	50	1.30

Tables:   1

The End!