genome.fa.s4658.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004658.1 Hibiscus syriacus cultivar Beakdansim tig00010442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100047

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6595--6752	40	4.5	34	78	12	110	41	1	7	49	1.42
6595--6749	36	4.3	37	79	14	103	41	1	7	48	1.43
6629--6748	40	3.2	38	86	8	149	44	0	7	47	1.37
6736--6777	22	1.9	22	85	9	59	40	0	2	57	1.12
6757--6840	36	2.3	36	82	13	109	48	1	5	44	1.34
6701--6812	55	2.0	57	86	6	158	42	0	5	51	1.24
6868--6930	14	4.4	14	86	7	83	17	3	0	79	0.86
6876--6930	5	11.6	5	84	7	71	14	3	0	81	0.82
6853--6930	24	3.3	24	82	8	81	21	2	0	75	0.92
8082--8115	15	2.2	16	94	5	61	11	2	0	85	0.71
8066--8116	9	6.0	8	82	17	59	13	5	0	80	0.89
8186--8223	16	2.4	16	87	12	53	28	5	0	65	1.14
17018--17087	35	2.0	35	88	2	106	22	17	2	57	1.53
22118--22355	39	5.9	39	82	10	246	45	2	6	45	1.43
22396--22454	12	4.5	12	84	16	73	25	1	0	72	0.93
22396--22454	27	2.2	27	90	3	93	25	1	0	72	0.93
22413--22471	15	4.1	15	78	12	54	18	3	0	77	0.90
34012--34059	24	2.0	24	84	8	62	18	6	16	58	1.59
34865--34918	26	2.1	26	96	0	99	27	7	44	20	1.78
38902--38963	32	1.9	33	86	3	90	19	12	12	54	1.70
39892--39920	10	3.0	10	95	5	51	0	6	0	93	0.36
39888--39920	11	3.1	11	91	4	50	0	9	0	90	0.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43174--43321	32	4.6	32	77	2	145	56	6	15	22	1.61
43174--43321	64	2.3	64	88	2	208	56	6	15	22	1.61
57421--57473	3	18.0	3	96	3	99	0	33	0	66	0.92
58085--58121	2	18.5	2	100	0	74	48	0	0	51	1.00
62686--62720	5	7.0	5	87	12	54	40	0	0	60	0.97
63550--63592	18	2.4	18	88	7	61	23	4	0	72	1.04
67285--67369	34	2.5	34	94	0	143	15	25	24	34	1.95
67391--67444	22	2.5	22	84	0	81	31	18	35	14	1.91
67474--67517	23	1.9	23	95	0	79	11	25	40	22	1.87
67471--67524	23	2.4	22	81	9	72	12	24	42	20	1.87
70536--70929	37	9.7	42	80	13	279	50	5	3	40	1.43
70576--70980	14	28.9	14	68	18	109	50	4	3	41	1.39
70579--70980	8	52.2	8	67	23	98	50	4	3	41	1.39
70638--70980	23	15.3	23	73	18	153	50	4	3	41	1.41
70748--70947	59	3.3	60	84	7	235	50	5	4	40	1.44
70624--70980	74	4.9	73	78	13	328	50	4	3	41	1.40
73463--73527	18	3.6	18	97	0	121	24	33	15	26	1.95
73771--73990	110	2.0	110	99	0	431	28	29	25	17	1.98
74850--74882	13	2.8	12	86	13	50	84	0	15	0	0.61
79905--79999	50	1.9	50	88	0	145	16	33	28	21	1.95
79889--80014	50	2.5	50	77	2	137	17	34	26	21	1.96
80093--80135	20	2.2	20	100	0	86	30	44	0	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80231--80266	17	2.1	18	94	5	65	27	5	0	66	1.13
80328--80660	111	3.0	111	94	2	589	36	7	10	45	1.67
82520--82574	21	2.6	21	85	0	74	30	20	36	12	1.90
82520--82576	18	3.2	18	82	0	78	31	21	35	12	1.90
86516--86749	114	2.1	114	89	1	353	42	5	9	42	1.60
86849--86896	21	2.2	23	85	7	64	54	0	12	33	1.38
89351--89377	13	2.1	13	100	0	54	37	14	25	22	1.93
92131--92185	20	2.8	20	97	0	101	27	29	7	36	1.84
93605--93660	21	2.7	21	82	0	76	23	23	21	32	1.98
93621--93715	21	4.6	21	74	19	83	25	23	21	30	1.99
93667--93750	21	4.2	21	76	14	79	28	23	21	26	1.99
93833--93876	6	7.5	6	92	7	65	29	54	15	0	1.42
93834--93872	13	3.2	13	89	10	64	28	56	15	0	1.40
93833--93879	13	4.1	11	89	10	60	29	53	17	0	1.44
94216--94311	39	2.5	39	96	0	174	35	17	18	28	1.94
94536--94589	21	2.6	21	90	0	90	25	24	22	27	2.00
95959--95996	13	2.9	13	92	0	67	10	60	21	7	1.54
96032--96109	41	1.9	41	91	0	129	16	43	20	19	1.88

Tables:   1

The End!