genome.fa.s4659.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004659.1 Hibiscus syriacus cultivar Beakdansim tig00010444_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131947

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727--817	43	2.1	42	82	6	112	36	24	18	20	1.95
6415--6471	2	28.5	2	100	0	114	49	0	0	50	1.00
9228--9277	22	2.3	22	96	0	91	26	12	28	34	1.92
10283--10348	20	3.4	19	77	10	71	34	16	12	36	1.86
10296--10359	20	3.2	20	72	22	55	32	14	12	40	1.83
17465--17499	18	1.9	18	88	11	54	48	2	0	48	1.16
21374--21919	251	2.1	259	89	5	851	26	12	20	40	1.88
22256--22302	18	2.7	18	90	3	69	29	25	8	36	1.86
27141--27203	19	3.3	19	80	10	74	34	22	30	12	1.91
27452--27510	27	2.2	27	93	0	100	27	10	27	35	1.89
28479--28518	18	2.2	18	90	0	62	50	0	0	50	1.00
32548--32633	29	3.0	29	81	3	102	37	8	1	53	1.38
32550--32644	29	3.3	29	76	7	97	36	7	1	54	1.35
32628--32660	15	2.1	16	88	5	50	48	3	0	48	1.17
32697--32762	2	33.5	2	93	3	116	50	0	0	50	1.00
32879--32953	27	2.7	28	75	10	73	46	2	8	42	1.47
36668--38249	108	14.6	108	89	2	2130	27	28	14	29	1.95
39023--39431	128	3.2	127	89	3	599	21	27	15	35	1.94
40675--40704	16	1.9	16	93	6	53	13	20	0	66	1.24
40674--40767	6	15.2	6	69	21	52	8	18	0	73	1.08
43077--43117	6	6.8	6	91	8	66	48	17	17	17	1.81
47712--47767	17	3.2	17	75	10	60	55	7	0	37	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49632--49735	52	2.0	52	94	0	181	39	10	11	38	1.76
49644--49760	52	2.2	52	86	3	155	41	10	11	36	1.76
62093--62127	16	2.2	16	100	0	70	48	0	5	45	1.26
65069--65110	20	2.2	20	86	4	59	9	16	28	45	1.79
65231--65290	20	3.0	20	92	2	93	28	18	20	33	1.96
70388--70445	3	20.0	3	76	13	59	32	1	1	63	1.14
70393--70445	14	3.6	15	82	10	56	33	1	1	62	1.17
70388--70445	17	3.3	18	81	11	68	32	1	1	63	1.14
71968--72000	15	2.3	15	89	5	50	42	3	0	54	1.15
72024--72273	135	1.9	133	80	5	297	36	7	7	49	1.59
80631--80800	76	2.3	75	85	1	214	31	15	21	31	1.95
82086--82162	22	3.5	22	96	0	145	33	11	14	40	1.82
83001--83288	76	3.8	76	96	0	522	23	19	23	33	1.97
83412--83899	76	6.4	76	94	0	823	24	19	22	33	1.97
82875--83701	411	2.0	414	95	0	1489	27	16	19	36	1.93
83412--83899	230	2.1	228	93	0	823	24	19	22	33	1.97
84017--84074	3	20.0	3	77	13	59	34	0	1	63	1.04
84017--84074	14	3.5	17	77	20	61	34	0	1	63	1.04
84948--84981	17	2.0	17	100	0	68	35	23	23	17	1.95
85475--85545	15	4.6	15	69	19	56	26	5	1	66	1.22
85628--85660	15	2.3	15	89	5	50	42	3	0	54	1.15
85682--85934	136	1.9	134	80	3	301	36	7	7	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97615--97667	18	2.9	18	91	0	88	28	30	22	18	1.98
97926--97951	2	13.0	2	100	0	52	50	0	0	50	1.00
98325--98394	36	1.9	37	85	8	99	20	27	21	31	1.98
102892--102916	9	2.8	9	100	0	50	28	12	0	60	1.32
103865--103902	17	2.2	17	86	9	51	21	15	5	57	1.57
104495--104528	16	2.2	16	89	5	52	44	0	0	55	0.99
104530--104562	10	3.4	10	91	4	50	30	0	0	69	0.88
104527--104559	15	2.2	15	94	0	57	27	0	0	72	0.85
108275--108311	15	2.5	15	90	0	56	8	18	64	8	1.45
111250--111276	13	2.1	13	100	0	54	14	22	22	40	1.90
119282--119400	26	4.3	26	79	12	139	21	18	19	40	1.92
122512--122559	2	24.5	2	95	4	89	52	0	0	47	1.00
123551--123615	31	2.2	29	88	5	94	9	20	18	52	1.72
124015--124061	21	2.4	19	89	10	76	48	0	0	51	1.00
125274--125313	3	13.3	3	83	0	53	57	0	2	40	1.12
125659--125701	22	2.0	22	90	0	68	23	23	16	37	1.94
125672--126301	116	5.4	116	90	1	985	27	21	20	30	1.98
125871--125934	21	3.0	23	68	15	64	17	23	23	35	1.95
125672--126890	231	5.4	232	81	10	1477	27	20	20	31	1.98
126102--126164	21	2.9	23	68	15	62	17	23	23	34	1.96
126220--126377	42	3.7	41	75	11	145	23	18	22	35	1.96
126086--126505	207	2.0	204	92	1	687	25	20	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126210--126390	89	2.0	89	93	2	310	24	18	21	35	1.95
125855--126737	438	2.0	436	92	1	1473	26	20	21	31	1.98
126293--126804	116	4.4	116	92	0	846	27	19	21	31	1.97
126706--126890	97	1.9	98	88	2	282	30	20	21	28	1.98
127919--128073	54	2.9	54	89	0	229	27	20	14	38	1.91
128343--128800	75	6.1	75	84	4	586	31	22	14	30	1.94
128343--128800	222	2.0	225	86	3	640	31	22	14	30	1.94
128786--128882	39	2.5	38	80	3	95	26	26	13	32	1.93
130918--131059	71	2.0	71	87	2	205	34	18	21	26	1.96

Tables:   1

The End!