genome.fa.s466.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000466.1 Hibiscus syriacus cultivar Beakdansim tig00000863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126160

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3605--3669	26	2.5	26	80	7	78	75	3	7	13	1.14
3605--3670	27	2.5	26	74	13	64	75	3	7	13	1.13
3726--3774	2	25.5	2	80	15	59	53	0	2	44	1.12
4020--4123	3	34.3	3	79	9	113	65	0	5	28	1.16
13235--13273	21	1.9	21	89	5	62	25	15	23	35	1.94
14662--14711	19	2.6	19	100	0	100	22	32	16	30	1.95
18238--18280	2	21.5	2	100	0	86	48	0	0	51	1.00
19078--19115	20	1.9	20	88	0	58	26	18	18	36	1.94
20788--20852	20	3.5	20	68	20	68	15	32	27	24	1.95
20782--20850	35	2.0	35	97	0	129	18	30	28	21	1.97
21865--21952	23	3.8	23	77	14	99	18	25	26	30	1.98
23595--23638	23	1.9	23	85	0	61	27	27	29	15	1.96
23666--23713	22	2.3	22	85	7	64	33	31	25	10	1.89
28489--28532	23	1.9	23	90	0	70	20	22	25	31	1.98
37105--37129	3	8.3	3	100	0	50	68	32	0	0	0.90
37355--37386	14	2.3	14	94	0	55	46	28	9	15	1.77
41923--41947	11	2.3	11	100	0	50	0	16	0	84	0.63
41973--42008	17	2.1	17	94	0	63	5	0	8	86	0.72
42575--42602	12	2.3	12	100	0	56	60	7	0	32	1.24
42963--42989	13	2.1	13	100	0	54	22	25	14	37	1.93
51626--51707	15	5.5	15	85	2	103	36	6	20	36	1.78
51620--51707	45	2.0	44	88	2	131	38	5	21	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51641--51707	30	2.3	30	97	2	127	38	7	19	34	1.80
51690--51739	20	2.5	20	96	0	91	40	8	16	36	1.77
51938--52017	30	2.8	27	78	12	79	55	1	2	41	1.21
52051--52104	21	2.7	20	81	13	58	53	0	0	46	1.00
54136--54208	23	3.2	23	90	0	110	38	20	5	35	1.76
54451--55055	183	3.3	182	94	1	1034	33	16	14	35	1.89
56281--56326	18	2.6	18	85	0	56	21	32	6	39	1.79
56281--56326	12	3.8	12	85	0	56	21	32	6	39	1.79
57849--58589	200	3.7	200	94	0	1295	30	18	14	36	1.91
58690--58750	19	3.3	18	88	2	59	52	11	1	34	1.47
58702--58750	19	2.6	19	96	0	89	55	10	2	32	1.45
59801--59867	20	3.3	20	91	6	109	17	17	10	53	1.71
59801--59876	20	3.8	20	86	11	86	18	17	11	52	1.74
59622--60058	201	2.2	202	87	2	619	26	16	13	43	1.85
61343--61385	22	1.9	23	85	4	61	32	4	0	62	1.15
62937--63014	6	13.0	6	100	0	156	33	0	16	50	1.46
67527--68168	6	107.3	6	97	1	1229	33	0	16	50	1.46
74089--74176	43	2.0	43	95	0	158	32	14	23	28	1.94
75505--75535	14	2.2	14	94	0	53	25	0	0	74	0.82
75552--75591	14	2.7	14	84	7	53	32	2	0	65	1.06
75574--75615	19	2.2	19	87	8	59	40	7	2	50	1.43
75867--75900	18	1.9	17	88	5	50	14	11	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75854--75900	17	2.7	17	78	12	51	17	10	0	72	1.12
79111--79161	9	5.6	9	73	13	50	78	1	17	1	0.94
79120--79172	28	2.0	25	89	10	79	75	3	16	3	1.10
79122--79172	13	3.8	14	82	15	63	74	3	17	3	1.12
79113--79172	26	2.4	26	83	8	72	75	3	18	3	1.09
80827--80898	37	1.9	37	88	0	108	26	20	13	38	1.90
80914--81001	36	2.4	36	94	0	158	29	22	10	37	1.87
80846--81064	101	2.2	101	84	2	269	31	21	10	36	1.87
80950--81121	65	2.6	65	83	2	200	30	20	8	40	1.82
80959--81131	67	2.6	67	83	7	185	33	20	8	37	1.82
81856--82054	110	1.8	110	89	4	312	36	23	18	21	1.95
83422--83517	19	5.6	16	76	13	68	32	4	0	63	1.13
83466--83505	14	2.7	14	84	7	53	32	2	0	65	1.06
83444--83498	23	2.4	23	84	0	65	27	3	0	69	1.05
83490--83586	2	49.5	2	77	15	78	40	5	1	53	1.30
83471--83678	12	16.9	12	69	15	70	35	4	1	58	1.28
83574--83659	37	2.4	34	78	9	91	29	5	2	62	1.30
83803--83846	9	4.7	9	80	8	52	13	6	0	79	0.92
83812--83847	18	2.0	18	94	0	63	13	11	0	75	1.06
83900--83958	19	3.3	17	74	19	57	13	1	5	79	0.97
83915--83974	26	2.4	25	80	8	68	15	3	5	76	1.08
89059--89083	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89430--89459	2	15.0	2	100	0	60	50	0	0	50	1.00
90913--91050	21	6.7	21	69	6	59	34	25	18	21	1.96
91018--91386	20	18.5	20	85	4	458	34	26	18	20	1.96
92069--92115	24	2.0	24	87	8	69	25	14	21	38	1.92
92290--92314	12	2.1	12	100	0	50	72	0	28	0	0.86
94595--94695	19	5.8	19	72	23	96	46	19	20	12	1.83
94595--94688	34	2.8	33	88	6	136	46	20	20	12	1.82
94702--94746	19	2.4	19	100	0	90	15	20	17	46	1.84
94711--94754	19	2.3	19	92	0	70	18	20	15	45	1.85
94853--94889	14	2.6	14	91	0	65	45	21	0	32	1.52
96850--96942	33	2.8	33	90	0	150	47	20	19	12	1.82
96869--96925	14	3.7	14	72	20	51	45	21	21	12	1.83
96813--96947	19	7.6	19	74	16	110	45	22	18	12	1.83
96943--97071	19	7.3	19	75	17	125	8	17	28	45	1.77
96943--97034	33	2.8	33	93	3	150	7	18	28	45	1.76
97115--97679	93	6.1	93	99	0	1107	46	18	12	22	1.83
97115--97679	185	3.0	186	98	0	1107	46	18	12	22	1.83
99386--99475	14	5.7	14	74	23	81	42	23	25	8	1.83
99378--99492	33	3.5	33	95	0	212	45	20	24	9	1.81
99385--99497	19	6.8	18	72	23	88	43	22	24	9	1.83
99493--99563	33	2.2	33	94	0	124	9	21	25	43	1.83
99684--99754	33	2.2	33	92	0	115	47	18	22	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99936--99990	22	2.5	22	81	0	74	20	16	40	23	1.91
100136--100328	20	9.6	20	82	5	219	19	19	25	35	1.95
100136--100328	60	3.2	60	83	0	251	19	19	25	35	1.95
100384--100435	20	2.6	20	96	0	95	21	13	26	38	1.90
102134--102179	22	2.0	24	87	8	69	52	0	2	45	1.13
119976--120036	22	2.8	22	82	7	81	29	26	16	27	1.97
125301--125341	22	1.9	22	85	5	57	26	19	12	41	1.87

Tables:   1

The End!