genome.fa.s4660.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004660.1 Hibiscus syriacus cultivar Beakdansim tig00010451_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84323

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540--1246	199	3.6	198	85	4	883	38	14	15	30	1.88
1337--1381	23	2.0	23	86	0	63	42	20	4	33	1.72
2760--2809	23	2.0	26	85	11	70	68	10	8	14	1.40
6895--6967	20	3.7	20	89	7	103	24	28	19	27	1.98
7483--7549	19	3.5	19	77	2	71	50	23	14	10	1.74
7545--7690	19	8.1	19	74	17	114	13	23	19	43	1.86
7586--7641	14	3.6	14	74	21	58	10	25	25	39	1.87
7567--7665	33	3.0	33	93	1	162	12	25	22	40	1.88
7633--7690	20	2.9	20	80	10	64	15	24	17	43	1.87
9834--9900	21	3.2	21	66	6	55	23	35	20	19	1.95
9807--9900	42	2.2	42	81	7	102	22	35	21	21	1.96
11258--11293	14	2.6	14	95	0	63	30	0	25	44	1.54
11399--11464	19	3.5	19	91	0	105	46	19	21	12	1.82
11399--11493	33	2.7	36	82	8	97	45	20	21	13	1.85
11489--11639	19	8.7	19	64	21	80	15	22	20	41	1.89
11493--11619	33	3.9	32	87	8	193	14	22	19	42	1.88
11486--11618	66	2.0	66	97	0	248	16	22	19	41	1.90
13916--13942	12	2.2	12	100	0	54	0	25	0	74	0.83
14116--14170	24	2.3	24	87	0	83	40	20	18	21	1.92
14955--15006	21	2.5	21	87	3	70	38	17	23	21	1.93
14995--15052	20	2.9	20	89	0	71	29	24	20	25	1.99
14991--15061	20	3.5	20	82	0	70	35	22	19	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15279--15362	20	4.2	20	75	6	98	38	25	21	15	1.92
15376--15446	33	2.2	33	81	0	79	19	18	21	40	1.91
15398--15447	14	3.2	14	75	24	55	12	20	20	48	1.80
15574--15610	14	2.6	14	86	0	56	48	21	0	29	1.50
17050--17109	21	2.9	20	73	11	59	20	13	45	21	1.85
17475--17578	20	5.6	20	78	12	89	46	21	19	13	1.84
17534--17623	14	5.8	14	69	21	54	51	22	15	11	1.75
17518--17629	33	3.4	33	95	1	190	49	21	17	11	1.78
17567--17624	14	3.9	14	79	16	71	48	24	17	10	1.78
17518--17640	65	1.9	66	88	5	187	48	22	17	11	1.78
17636--17702	19	3.8	19	73	18	72	13	19	19	47	1.82
17658--17716	14	3.9	14	76	20	64	10	16	23	49	1.77
17644--17728	33	2.6	33	96	0	152	11	17	21	49	1.78
17730--17771	20	2.1	20	86	0	57	16	21	26	35	1.94
18253--18297	18	2.5	18	88	0	72	13	15	44	26	1.83
19616--19670	20	2.8	20	75	2	58	47	20	16	16	1.83
20115--20230	20	5.7	21	72	12	80	25	17	21	36	1.95
20115--20209	41	2.3	41	83	0	127	24	16	22	36	1.94
20176--20229	20	2.7	20	91	0	81	29	18	20	31	1.96
20218--20273	21	2.7	21	94	0	94	14	25	19	41	1.89
20321--20361	21	2.0	21	85	0	55	34	29	17	19	1.94
20728--20775	18	2.7	18	80	9	62	41	0	4	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20751--20824	37	2.0	38	86	5	107	43	2	2	51	1.30
20761--20835	37	2.1	36	84	2	96	48	2	1	48	1.24
22057--22102	20	2.3	19	89	10	74	54	10	17	17	1.70
24489--24552	21	3.0	21	81	0	74	39	15	29	15	1.89
24586--24645	32	1.9	31	89	3	93	30	0	46	23	1.52
26445--26493	19	2.6	19	93	0	80	30	2	10	57	1.43
26612--27185	197	2.9	199	96	1	1044	37	15	16	30	1.90
27146--27197	21	2.3	23	70	12	54	38	9	13	38	1.77
28800--28859	25	2.4	25	88	0	84	35	6	15	43	1.72
29209--29357	23	6.5	23	88	0	217	34	5	19	40	1.74
29209--29357	46	3.2	46	96	0	271	34	5	19	40	1.74
29780--29816	18	2.1	18	89	0	56	32	5	10	51	1.60
29772--29818	24	2.0	24	86	0	67	34	4	14	46	1.64
30072--30158	39	2.2	39	91	0	147	48	19	13	18	1.81
30584--30649	23	2.9	22	90	4	96	33	4	22	39	1.75
33390--33432	22	2.0	21	86	13	61	13	2	6	76	1.08
33392--33432	21	2.0	21	85	9	57	12	2	7	78	1.06
34879--34938	23	2.6	22	84	10	68	40	1	5	53	1.33
39606--39700	31	3.1	31	76	3	102	35	21	16	26	1.94
39834--39869	17	2.0	19	89	10	58	38	11	5	44	1.63
40353--40503	64	2.3	65	85	6	191	28	17	19	34	1.95
41726--41819	3	31.7	3	74	6	75	62	1	1	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42091--42207	58	2.0	58	91	0	189	29	18	14	37	1.91
42149--42772	248	2.5	248	93	0	1063	25	19	14	40	1.90
42149--42772	123	5.0	123	92	1	1025	25	19	14	40	1.90
43946--43980	18	1.9	18	100	0	70	57	5	5	31	1.46
44353--44406	11	4.6	11	77	20	56	1	16	0	81	0.78
44353--44406	17	3.0	18	82	17	76	1	16	0	81	0.78
44327--44394	30	2.4	28	82	7	82	8	13	0	77	0.98
44334--44406	30	2.5	29	82	6	85	6	15	0	78	0.96
52814--52855	21	2.0	21	90	0	66	26	26	21	26	1.99
52931--53021	31	3.0	31	96	3	168	42	17	6	32	1.75
55675--55732	30	2.0	29	86	10	82	56	0	5	37	1.21
56461--56513	26	2.0	27	82	10	65	64	0	3	32	1.12
57681--57721	16	2.6	16	100	0	82	26	26	21	24	2.00
57924--58017	3	31.7	3	72	6	66	59	1	2	37	1.16
64926--64965	19	2.0	20	86	13	57	45	2	5	47	1.38
69718--69767	10	5.0	10	80	0	55	34	32	0	34	1.58
69718--69767	20	2.5	20	90	0	73	34	32	0	34	1.58
69797--69851	23	2.3	26	84	12	73	32	0	1	65	1.03
69796--69862	23	3.0	23	74	18	61	34	0	1	64	1.03
71903--71939	18	2.1	18	89	0	56	32	18	32	16	1.93
72133--72206	34	2.2	34	81	11	82	21	2	13	62	1.44
72144--72220	34	2.2	34	84	11	95	20	1	16	61	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72215--72295	38	2.3	31	75	24	81	25	8	9	55	1.61
73902--74022	51	2.4	51	81	0	143	47	13	13	25	1.78
74412--74498	38	2.3	38	77	15	90	47	1	3	48	1.26
74545--74612	30	2.4	27	74	21	68	41	5	0	52	1.25
78141--78254	38	3.0	38	100	0	228	39	23	2	34	1.69
79201--79238	20	1.9	20	89	10	60	50	7	0	42	1.31
84167--84283	34	3.3	35	75	15	121	19	17	19	42	1.89

Tables:   1

The End!