Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004661.1 Hibiscus syriacus cultivar Beakdansim tig00010453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67352

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8768--8819
20
2.6
20
90
0
86
23
23
17
36
1.95
12298--12343
22
2.1
22
84
8
58
52
8
2
36
1.45
13209--13241
13
2.5
13
90
9
50
33
0
66
0
0.92
15697--15736
21
2.0
19
85
9
53
7
32
0
60
1.25
17717--17752
16
2.2
17
90
5
56
41
19
2
36
1.66
23381--23465
21
4.1
21
81
1
91
29
23
14
32
1.94
25927--25964
17
2.2
17
95
0
67
13
23
44
18
1.85
25934--25990
19
2.8
19
89
7
78
10
19
50
19
1.75
25933--25997
19
3.3
19
76
20
62
10
23
47
18
1.79
33078--33111
17
2.0
17
94
0
59
14
23
41
20
1.89
33123--33200
9
8.3
9
79
8
75
26
29
29
14
1.95
33125--33201
19
4.1
19
77
12
86
27
29
27
15
1.96
38935--39111
73
2.4
74
85
3
225
36
12
7
44
1.70
39295--40022
185
3.9
184
82
3
807
32
17
11
39
1.85
39295--40022
184
3.9
185
82
2
809
32
17
11
39
1.85
46089--46129
20
2.0
20
90
4
64
39
2
0
58
1.11
46081--46132
24
2.1
25
89
3
79
34
3
0
61
1.14
46126--46157
13
2.6
12
90
9
55
9
15
0
75
1.05
46226--46263
2
19.0
2
100
0
76
50
0
0
50
1.00
46288--46330
19
2.3
19
88
8
61
27
4
4
62
1.35
53976--54030
27
2.0
27
100
0
110
36
20
14
29
1.92
55304--55345
6
7.0
6
84
15
52
80
0
19
0
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56269--56392
42
2.9
43
78
3
135
33
28
14
24
1.94
58366--58421
22
2.6
21
75
8
58
33
3
0
62
1.12
58657--58720
24
2.6
24
80
11
76
12
10
3
73
1.21
65078--65159
22
3.8
22
79
9
96
25
30
25
18
1.98
66685--66722
18
2.1
19
90
5
60
50
21
26
2
1.62

Tables:   1

The End!