genome.fa.s4662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004662.1 Hibiscus syriacus cultivar Beakdansim tig00010454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83381

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1016--1061	21	2.2	20	84	7	56	0	19	2	78	0.86
1016--1061	11	4.4	10	81	10	56	0	19	2	78	0.86
1057--1082	8	3.2	8	100	0	52	11	0	0	88	0.52
1016--1077	29	2.3	27	78	15	65	3	14	1	80	0.91
1016--1112	15	6.3	15	70	21	51	6	14	1	78	1.00
1047--1134	46	1.9	46	84	9	117	10	13	1	75	1.11
2467--2601	49	2.7	50	85	5	175	20	14	14	51	1.75
4868--4930	32	2.0	32	83	0	81	20	28	28	22	1.98
7301--7482	65	2.8	65	81	8	199	32	18	20	28	1.96
9934--10031	23	4.5	22	69	19	64	30	19	23	26	1.98
12827--12857	16	1.9	16	93	0	53	25	12	9	51	1.70
15061--15114	19	2.8	19	97	0	99	24	22	31	22	1.98
15100--15255	65	2.4	65	82	2	179	32	19	19	28	1.96
16391--16461	30	2.3	33	90	9	114	30	1	2	64	1.16
18683--18745	27	2.3	27	94	0	108	26	20	17	34	1.95
24372--24766	187	2.1	186	90	3	607	46	6	3	43	1.45
27510--27553	20	2.2	20	88	4	63	38	0	0	61	0.96
27509--27556	21	2.4	19	82	6	60	39	0	0	60	0.97
28145--28191	18	2.7	18	93	3	78	31	8	31	27	1.87
28584--29161	273	2.2	266	87	8	807	40	19	12	26	1.88
31465--31502	20	1.9	20	88	0	58	52	2	2	42	1.29
35296--35390	35	2.7	35	93	1	156	26	36	9	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42243--42301	21	2.8	22	78	14	63	72	6	1	18	1.15
42268--42355	15	5.6	15	70	21	65	73	3	3	19	1.11
42284--42398	49	2.4	48	81	8	119	70	3	4	21	1.20
42321--42397	24	3.2	23	71	14	66	72	2	2	22	1.09
42897--42951	24	2.3	25	87	6	78	36	1	49	12	1.52
43725--43840	36	3.2	35	80	6	108	50	4	2	43	1.36
43830--43941	39	3.0	38	81	5	147	49	4	4	41	1.43
43766--43925	90	1.8	85	84	9	214	47	4	5	43	1.45
43891--43988	46	2.2	46	85	5	128	47	6	3	42	1.43
44099--44131	2	16.5	2	100	0	66	51	0	0	48	1.00
44794--45966	86	13.8	86	84	2	1397	24	17	21	36	1.95
44821--45966	171	6.7	171	85	2	1455	23	17	21	36	1.95
44821--45966	257	4.5	257	85	3	1445	23	17	21	36	1.95
47205--47406	96	2.1	96	86	6	293	30	17	16	35	1.92
49942--50009	34	2.0	35	82	8	86	69	1	7	22	1.22
51314--51504	36	5.2	36	82	9	217	46	5	2	45	1.38
51602--51644	10	4.2	11	88	11	65	53	0	0	46	1.00
51609--51644	2	19.5	2	83	16	51	55	0	0	44	0.99
51602--51647	8	5.2	9	89	10	53	54	0	0	45	0.99
53851--53931	34	2.4	30	76	23	81	51	2	3	41	1.32
53945--53975	16	1.9	16	93	0	53	54	3	3	38	1.32
55381--55430	26	2.0	26	88	4	75	14	16	34	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55467--55530	3	21.0	3	90	3	101	64	0	0	35	0.94
56059--56087	2	14.5	2	100	0	58	48	0	0	51	1.00
58525--58554	3	9.7	3	92	7	51	66	0	0	33	0.92
60453--60505	2	26.5	2	100	0	106	50	0	0	49	1.00
60497--60814	37	8.6	37	81	9	319	44	2	7	45	1.45
62139--62250	7	14.4	7	70	18	55	24	1	1	72	1.04
62219--62248	4	7.2	4	92	7	51	23	0	0	76	0.78
62202--62248	12	3.7	13	79	20	55	23	2	0	74	0.93
65011--65044	12	2.7	13	90	9	61	41	5	5	47	1.52
68018--68162	64	2.3	64	84	4	177	30	17	22	29	1.97
74917--75873	316	3.0	318	93	2	1580	37	21	13	28	1.91
80201--80599	84	4.7	84	85	6	497	33	22	17	26	1.96
81217--81520	34	8.8	34	76	15	191	45	2	7	44	1.46
81212--81520	37	8.9	34	77	14	219	44	2	7	44	1.46
81536--81579	15	3.1	15	78	15	58	29	0	0	70	0.88
81525--81579	27	2.1	25	90	6	83	27	0	0	72	0.85
82863--82913	17	2.9	17	85	8	59	15	0	3	80	0.86
82865--82913	10	5.0	10	76	20	50	16	0	2	81	0.78

Tables:   1

The End!