genome.fa.s4663.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004663.1 Hibiscus syriacus cultivar Beakdansim tig00010455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90133

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21609--21636	2	14.0	2	100	0	56	50	0	0	50	1.00
25938--25981	19	2.3	19	88	0	61	56	0	0	43	0.99
26461--26690	20	11.5	20	86	1	246	37	25	17	19	1.94
27373--27419	24	2.0	24	87	8	69	25	14	21	38	1.92
27594--27618	12	2.1	12	100	0	50	72	0	28	0	0.86
29955--30123	19	9.4	19	82	15	225	14	23	17	45	1.84
29936--30106	53	3.2	53	99	0	335	13	23	17	45	1.84
29936--30123	33	5.4	34	74	19	165	13	23	17	44	1.85
30182--30343	33	4.7	33	75	16	159	45	17	22	14	1.85
30182--30349	19	9.6	19	76	18	177	44	17	22	15	1.87
30182--30349	52	3.2	52	95	0	300	44	17	22	15	1.87
30356--30454	19	5.5	19	84	12	138	15	23	17	44	1.86
30339--30454	51	2.2	53	93	3	200	14	25	17	43	1.87
30561--30597	14	2.6	14	91	0	65	45	21	0	32	1.52
32581--32637	14	3.7	14	77	20	60	45	22	21	10	1.82
32562--32654	33	2.8	33	95	0	168	47	21	20	10	1.80
32525--32659	19	7.6	19	76	16	128	45	23	19	11	1.82
32655--32783	19	7.3	19	75	17	116	9	17	27	45	1.78
32655--32746	33	2.8	33	91	3	141	8	18	27	45	1.78
32827--33300	93	5.1	93	98	0	912	45	18	12	22	1.83
34993--35107	33	3.5	33	95	0	212	45	20	24	9	1.81
35000--35107	14	6.5	18	72	25	87	44	22	24	9	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35109--35181	21	3.5	21	83	3	103	12	24	17	45	1.83
35261--35331	33	2.2	33	89	0	106	47	16	23	11	1.79
35713--35906	20	9.6	20	82	5	221	19	19	25	35	1.95
35713--35906	60	3.2	60	83	0	253	19	19	25	35	1.95
35893--35975	21	4.0	21	73	6	78	25	16	24	33	1.96
35873--35971	42	2.4	43	77	11	100	21	18	23	37	1.94
36402--36487	38	2.3	37	86	7	129	52	4	5	37	1.46
36938--36989	18	2.9	18	72	11	54	57	3	0	38	1.17
37091--37141	19	3.1	16	78	13	50	27	21	7	43	1.80
38455--38496	18	2.4	17	80	7	57	26	45	9	19	1.80
38455--38508	18	3.2	16	77	12	54	29	42	11	16	1.83
45186--45296	35	3.2	35	87	5	136	42	23	0	33	1.60
46354--46430	35	2.2	35	88	4	120	37	0	19	42	1.51
50000--50040	20	2.0	20	86	9	57	43	0	0	56	0.99
50030--50061	17	1.9	17	93	6	57	68	0	0	31	0.90
53913--54207	148	2.0	149	90	3	470	48	9	6	35	1.60
58176--58255	37	2.2	36	82	8	101	45	18	2	33	1.63
59844--59878	17	2.1	16	94	5	61	51	5	0	42	1.25
59997--60022	9	2.9	9	100	0	52	23	7	23	46	1.78
63317--63418	35	2.9	35	88	2	141	46	10	4	38	1.61
70800--70960	80	2.0	80	85	3	218	39	11	16	32	1.85
84927--84972	21	2.2	21	88	0	65	41	28	6	23	1.79

Tables:   1

The End!