genome.fa.s4664.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004664.1 Hibiscus syriacus cultivar Beakdansim tig00010458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132823

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3734--3765	14	2.3	14	94	0	55	56	0	0	43	0.99
8938--8983	18	2.6	19	80	13	53	32	6	17	43	1.75
16232--16262	15	2.0	16	93	6	55	32	0	16	51	1.44
21674--21750	34	2.2	33	80	13	84	29	0	5	64	1.15
21706--21782	31	2.5	31	80	6	84	36	0	1	62	1.04
21921--21974	17	3.2	17	72	0	54	31	0	3	64	1.11
23503--23550	21	2.3	21	85	0	60	25	39	12	22	1.89
23554--23605	21	2.5	21	96	0	95	17	32	28	21	1.96
24127--24222	32	2.9	33	84	4	122	55	4	2	38	1.31
24621--25369	127	5.9	128	94	2	1207	33	19	24	22	1.97
24621--25369	380	2.0	378	90	4	1195	33	19	24	22	1.97
25440--25472	8	4.2	8	84	7	50	36	27	0	36	1.57
31477--31527	20	2.5	20	96	0	93	23	17	11	47	1.81
32586--32625	13	2.9	14	81	7	55	10	10	22	57	1.61
35973--36017	12	3.8	12	93	0	72	71	0	2	26	0.98
41937--42010	34	2.2	34	85	4	96	43	1	4	51	1.29
47602--47675	34	2.2	34	92	0	121	27	2	14	55	1.53
47570--47689	42	3.0	40	75	18	126	24	4	16	55	1.59
47738--47892	73	2.3	67	74	16	163	21	7	21	49	1.73
47870--47902	16	2.0	17	88	5	50	15	0	27	57	1.38
49035--49074	21	1.9	21	84	0	53	27	15	10	47	1.77
51379--51403	2	12.5	2	100	0	50	0	48	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58535--58576	18	2.3	18	95	0	75	38	2	16	42	1.61
59368--59671	155	2.0	155	91	1	493	28	12	13	45	1.81
69025--69210	74	2.5	75	86	3	250	20	24	32	23	1.98
69173--69254	22	3.7	22	100	0	164	13	21	39	25	1.90
71851--71932	21	3.9	21	72	15	60	15	25	34	24	1.95
75735--75774	21	1.9	21	85	10	55	35	10	2	52	1.48
78585--78641	21	2.8	20	73	5	60	50	0	3	45	1.18
78760--78834	28	2.8	26	78	11	71	50	1	2	45	1.24
78779--78839	28	2.2	27	85	8	86	55	0	3	40	1.16
79206--79246	5	8.8	5	84	10	52	24	0	0	75	0.80
79210--79234	13	1.9	13	100	0	50	28	0	0	72	0.86
79877--79909	16	2.1	16	94	0	57	63	0	3	33	1.10
80108--80132	7	3.6	7	100	0	50	16	0	28	56	1.41
83613--83687	13	5.9	12	73	13	53	78	4	4	13	1.03
83870--83968	52	1.9	51	80	13	114	62	2	3	32	1.22
83938--83980	18	2.5	17	85	7	61	67	2	4	25	1.22
83866--83988	58	2.2	55	82	11	142	60	2	3	33	1.25
84984--85614	105	6.0	105	89	2	887	21	17	26	34	1.96
85814--85889	36	2.1	36	87	0	107	40	14	21	23	1.90
85789--86107	105	3.1	104	91	2	491	36	11	20	31	1.88
86222--86336	36	3.2	36	71	2	106	45	13	15	26	1.83
86181--86351	72	2.3	74	83	9	199	42	12	18	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87492--88028	183	2.9	183	94	0	932	31	21	20	27	1.98
91913--92018	24	4.0	25	72	20	67	71	2	8	16	1.23
91966--92044	22	3.6	21	75	16	65	75	5	2	16	1.08
92280--92322	18	2.5	17	85	7	61	67	2	4	25	1.22
92679--92780	37	2.8	37	86	0	123	31	13	11	43	1.80
93560--93600	12	2.9	15	79	20	61	24	0	43	31	1.54
94952--95150	108	1.9	103	84	7	265	24	18	16	41	1.90
98853--98887	2	17.5	2	100	0	70	0	51	0	48	1.00
100408--100433	2	13.0	2	100	0	52	50	0	0	50	1.00
101869--101924	14	4.3	14	76	17	66	10	12	23	53	1.69
101876--101945	24	2.9	24	87	4	97	12	10	18	58	1.62
102670--102744	10	7.7	10	69	21	61	9	12	21	57	1.62
102676--102740	16	4.1	16	95	0	121	7	12	23	56	1.61
103674--103717	12	3.7	12	75	0	52	20	13	13	52	1.74
103670--103735	24	2.8	24	90	0	96	24	16	13	45	1.84
103690--103749	24	2.5	24	83	2	66	26	16	11	45	1.82
104570--104621	20	2.6	20	96	0	95	38	26	13	21	1.90
104612--104709	21	4.8	20	74	10	65	36	21	19	22	1.95
104677--105045	20	18.5	20	85	4	458	34	26	18	20	1.96
105728--105774	24	2.0	24	83	8	60	27	14	19	38	1.91
105949--105973	12	2.1	12	100	0	50	72	0	28	0	0.86
108256--108581	19	18.4	19	81	15	405	46	18	19	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108256--108581	71	4.6	71	86	9	456	46	18	19	15	1.83
108323--108619	142	2.1	143	95	1	535	46	17	19	16	1.85
108284--108603	52	6.0	55	89	8	390	46	17	20	15	1.84
108610--108711	19	5.6	19	85	12	151	14	23	17	44	1.86
108818--108854	14	2.6	14	91	0	65	45	21	0	32	1.52
108906--108960	22	2.5	22	81	0	74	20	16	40	23	1.91
109106--109298	20	9.6	20	82	5	219	19	19	25	35	1.95
109106--109298	60	3.2	60	83	0	251	19	19	25	35	1.95
109354--109405	20	2.6	20	96	0	95	21	13	26	38	1.90
113636--113735	2	54.5	2	68	16	65	50	0	0	50	1.00
113636--113734	44	2.3	43	91	5	155	49	0	0	50	1.00
113638--113729	38	2.4	39	85	10	120	50	0	0	50	1.00
113636--113756	44	2.8	44	85	6	133	49	0	0	50	1.00
113636--113747	38	2.9	39	80	15	119	50	0	0	49	1.00
114379--114459	12	6.3	12	69	17	56	67	7	1	23	1.23
114475--114552	22	3.6	22	74	10	72	66	5	2	25	1.25
114498--114571	22	3.5	21	68	15	62	70	6	2	20	1.23
114445--114624	92	2.0	92	85	8	251	67	6	2	23	1.26
114541--114623	25	3.5	25	67	25	72	69	7	3	19	1.27
114445--114623	46	3.9	47	83	12	219	68	6	2	22	1.26
115821--115861	21	1.9	22	85	14	59	53	12	0	34	1.38
116723--116770	16	3.1	16	78	6	53	68	2	2	27	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116723--116771	15	3.2	15	76	2	53	67	2	2	28	1.13
116722--116795	29	2.5	31	82	4	98	63	1	4	31	1.21
118124--118174	2	25.5	2	100	0	102	50	0	49	0	1.00
118410--118959	274	2.0	274	99	0	1082	35	19	12	32	1.89
119690--119715	10	2.6	10	100	0	52	50	19	19	11	1.77
125183--125234	15	3.5	15	97	0	95	5	17	69	7	1.33
126113--126145	17	1.9	17	93	0	57	54	0	0	45	0.99
127035--127079	23	2.0	23	90	0	72	26	24	40	8	1.84
127103--127158	29	1.9	29	96	0	103	21	28	37	12	1.90
127217--127273	29	2.0	29	86	6	80	24	31	31	12	1.92
127519--127551	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1

The End!