genome.fa.s4665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004665.1 Hibiscus syriacus cultivar Beakdansim tig00010463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54708

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2878--2939	26	2.3	27	94	2	108	33	17	20	27	1.96
5165--5195	15	2.0	16	93	6	55	64	3	0	32	1.09
5367--5491	42	3.0	41	75	17	114	42	2	2	52	1.27
6310--6435	64	2.0	64	84	3	164	29	19	19	31	1.96
6442--6495	19	2.8	19	97	0	99	22	31	22	24	1.98
8709--8739	16	1.9	16	93	0	53	51	9	12	25	1.70
11552--11650	23	4.5	23	71	16	77	26	23	20	30	1.98
14123--14282	65	2.4	65	84	6	189	30	19	17	33	1.95
14141--14305	65	2.5	64	81	8	181	28	21	18	30	1.97
16685--16760	32	2.4	32	78	6	84	21	26	30	22	1.99
19056--19193	51	2.7	51	86	2	188	52	13	13	19	1.73
20570--20671	36	2.8	35	79	8	89	77	1	11	8	1.07
20579--20653	17	4.4	17	70	12	55	80	0	10	9	0.92
20612--20642	13	2.3	14	94	5	55	90	0	0	9	0.46
20579--20657	14	5.2	15	75	12	56	79	0	11	8	0.93
20638--20683	11	4.3	11	80	5	58	78	2	19	0	0.86
20619--20683	29	2.3	27	79	10	67	81	1	13	3	0.88
20612--20683	7	10.3	7	75	14	51	81	1	12	4	0.89
20624--20683	21	2.8	21	78	9	59	80	1	15	3	0.93
22626--23695	55	19.1	55	75	11	549	33	9	14	42	1.78
22663--23018	164	2.2	165	83	4	475	33	8	15	42	1.77
22823--23211	193	2.0	193	100	0	778	34	9	14	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22940--23099	83	1.9	84	85	3	225	35	10	15	38	1.81
23018--23562	110	5.0	110	84	1	700	34	9	14	41	1.79
23018--23550	221	2.4	220	87	2	768	34	9	14	41	1.78
23570--23728	56	2.8	57	80	5	171	33	7	17	41	1.78
28280--28318	12	3.2	12	88	0	60	10	33	28	28	1.90
30986--31090	54	1.9	54	84	0	138	26	18	18	37	1.93
35489--35571	24	3.9	22	72	21	70	30	19	25	25	1.98
36131--36290	65	2.5	66	82	9	177	30	20	17	32	1.95
36275--36385	19	5.8	19	89	0	168	23	31	19	25	1.98
36275--36385	38	2.9	38	95	0	195	23	31	19	25	1.98
38849--38924	32	2.4	32	82	6	93	21	27	30	21	1.98
39272--39314	22	2.0	22	82	8	54	55	4	18	20	1.60
43098--43235	51	2.7	51	85	2	179	52	13	13	20	1.73
45392--45451	28	2.1	28	87	0	84	40	33	5	21	1.75
46727--47416	55	12.6	55	84	2	825	32	9	15	42	1.79
47424--47582	56	2.8	57	80	5	180	33	6	18	41	1.75

Tables:   1

The End!