genome.fa.s4666.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004666.1 Hibiscus syriacus cultivar Beakdansim tig00010464_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118415

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3237--3284	12	3.8	12	83	5	51	39	18	18	22	1.92
3251--3286	12	3.0	12	87	0	54	36	22	22	19	1.95
4189--4252	22	3.1	22	71	17	73	28	26	21	23	1.99
4176--4252	40	1.9	40	91	0	127	29	29	20	19	1.97
4629--4671	16	2.7	16	96	0	77	44	20	4	30	1.72
9110--9179	18	3.7	18	80	14	77	20	17	32	30	1.95
14348--14462	51	2.3	51	84	3	142	36	2	6	53	1.42
15204--15242	9	4.3	9	84	9	53	82	0	10	7	0.86
22205--22252	25	1.9	25	82	0	60	41	2	8	47	1.45
22329--22353	12	2.1	12	100	0	50	40	0	8	52	1.31
22261--22559	36	7.9	36	83	9	352	46	2	7	43	1.46
22274--22559	109	2.6	107	83	12	346	46	2	7	43	1.47
22531--22585	23	2.3	24	87	6	76	45	0	9	45	1.35
22487--22621	62	2.1	63	86	5	184	45	0	8	44	1.40
22683--22749	21	3.3	20	78	17	77	22	2	0	74	0.95
22687--22738	20	2.6	21	85	11	65	23	1	0	75	0.91
22689--22761	21	3.5	20	82	14	76	23	2	0	73	0.95
23947--23972	7	3.7	7	100	0	52	0	11	0	88	0.52
23984--24042	5	12.0	5	75	10	59	18	3	0	77	0.90
25077--25336	140	1.9	140	94	0	457	27	10	18	43	1.82
29356--29416	31	2.0	31	93	3	106	24	16	29	29	1.96
30536--30594	16	3.8	16	93	2	93	27	28	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30739--30806	20	3.2	22	69	25	65	38	1	4	55	1.29
30789--30835	19	2.5	19	86	3	60	31	6	0	61	1.21
31428--31481	23	2.3	23	96	0	99	40	27	7	24	1.81
31574--31618	20	2.2	20	88	0	63	60	15	8	15	1.59
31586--31627	20	2.1	20	90	0	66	64	14	9	11	1.50
34296--34442	61	2.4	61	87	2	206	35	9	4	51	1.54
34481--34522	20	2.1	20	100	0	84	54	0	0	45	0.99
34528--34645	33	3.8	33	73	17	117	40	6	7	44	1.59
34514--34657	58	2.7	51	79	17	182	40	5	7	46	1.56
34529--34659	58	2.3	58	87	2	183	39	6	8	45	1.59
34514--34610	25	3.8	25	70	15	65	40	7	7	45	1.59
34621--34812	2	91.0	2	66	19	79	44	4	6	43	1.51
34517--34685	18	9.3	18	69	13	105	39	5	8	46	1.58
34623--34693	36	2.0	36	88	0	106	39	5	7	47	1.54
34621--34845	18	11.2	21	67	21	67	43	4	8	43	1.55
34621--34747	20	6.2	20	76	15	93	44	3	6	45	1.47
34664--34774	27	4.1	27	74	11	77	45	5	7	42	1.54
34698--34890	33	5.9	32	68	25	102	47	4	7	40	1.51
34841--34914	20	3.5	20	77	16	85	52	1	6	39	1.36
34854--34903	13	3.8	13	77	17	59	54	2	6	38	1.37
34965--35083	11	10.6	11	68	13	64	47	4	1	46	1.31
35108--35185	27	2.8	28	79	9	81	39	6	8	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35177--35280	2	51.0	2	74	14	88	46	3	1	48	1.31
35170--35275	42	2.5	43	84	9	153	47	4	1	46	1.34
35177--35280	11	9.5	11	71	21	69	46	3	1	48	1.31
35168--35285	42	2.8	41	77	12	132	44	4	2	48	1.35
35304--36120	210	3.8	213	92	2	1238	29	11	7	50	1.67
38974--39032	20	3.0	20	89	0	82	28	25	13	32	1.94
38991--39227	103	2.3	103	88	1	350	25	15	16	41	1.88
39198--39249	20	2.6	20	87	0	77	26	17	21	34	1.95
44923--44956	8	4.2	8	84	0	50	38	5	0	55	1.24
45220--45377	55	2.9	54	83	6	178	24	24	20	31	1.98
45371--45923	55	10.1	55	90	3	801	28	26	14	30	1.95
46930--46988	8	7.5	8	90	5	77	8	10	0	81	0.88
46956--47016	7	8.3	7	77	13	52	6	16	0	77	0.98
56970--57007	16	2.3	16	95	4	67	36	28	7	26	1.84
58456--58489	8	4.2	8	84	0	50	38	5	0	55	1.24
63129--63195	26	2.6	26	95	0	116	25	10	16	47	1.78
63688--63779	30	3.1	30	87	3	132	23	21	30	23	1.99
63862--63946	29	3.0	29	89	1	109	16	24	25	32	1.96
63989--64018	12	2.5	12	100	0	60	33	33	26	6	1.83
64170--64269	50	2.0	50	100	0	200	58	6	34	2	1.34
64315--64466	46	3.3	43	86	9	198	37	2	9	50	1.50
64521--64715	33	5.6	32	76	16	174	42	2	10	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64597--64750	39	4.0	38	74	19	149	41	1	11	45	1.49
64597--64750	40	4.0	40	75	18	148	41	1	11	45	1.49
64530--64750	109	2.0	110	84	8	288	42	1	11	44	1.51
64572--64750	76	2.4	75	83	7	220	42	1	11	44	1.50
67270--67339	25	2.9	25	74	24	69	52	2	0	44	1.15
67668--67708	16	2.5	17	88	8	66	68	0	2	29	1.03
69150--69187	19	2.0	19	100	0	76	31	15	26	26	1.96
73412--73451	21	1.9	21	100	0	80	12	42	5	40	1.64
73797--73878	29	2.8	30	81	7	98	29	29	23	18	1.97
73938--73999	30	2.1	30	87	0	88	19	29	27	24	1.98
74795--74865	20	3.8	18	75	12	63	64	5	2	26	1.29
76253--76280	8	3.5	8	100	0	56	21	14	42	21	1.88
77873--77997	65	1.9	65	91	3	207	32	18	20	28	1.96
78417--78445	2	14.5	2	100	0	58	51	0	0	48	1.00
80419--80498	23	3.6	22	77	6	90	26	23	23	26	2.00
80445--80517	21	3.4	21	73	12	60	23	21	26	28	1.99
80417--80517	44	2.3	43	84	5	132	25	21	24	27	1.99
88162--88196	16	2.2	16	90	10	54	40	0	0	60	0.97
89703--89775	3	24.7	3	89	8	114	64	1	0	34	1.02
90100--90688	113	5.3	112	89	4	820	29	19	13	36	1.91
90100--90688	222	2.6	223	87	4	848	29	19	13	36	1.91
90596--90761	73	2.3	73	97	0	314	34	18	15	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94149--94373	114	2.0	114	93	0	387	32	19	13	34	1.91
98429--98456	12	2.3	12	100	0	56	53	7	14	25	1.66
98397--98455	26	2.3	26	81	0	82	59	6	11	22	1.56
98515--98556	7	6.0	7	78	10	50	54	14	16	14	1.71
100048--100105	28	2.1	28	84	6	75	60	1	5	32	1.29
100131--100155	7	3.6	7	100	0	50	32	0	0	68	0.90
100820--100860	14	2.7	15	75	24	50	58	0	4	36	1.20
100905--100944	2	21.0	2	85	10	57	45	0	0	55	0.99
100904--100944	15	2.7	15	96	0	73	43	0	0	56	0.99
100907--100932	13	2.0	13	100	0	52	46	0	0	53	1.00
102422--102496	3	24.7	3	97	2	141	66	0	0	33	0.92
103381--103411	7	4.4	7	100	0	62	48	0	0	51	1.00
103465--103506	16	2.7	15	85	10	50	80	0	7	11	0.88
103395--103503	56	1.9	57	83	9	141	69	0	7	22	1.13
106894--106986	33	2.8	34	91	1	152	27	23	12	35	1.92
107039--107135	46	2.1	46	98	0	185	34	16	6	43	1.73
109887--109923	17	2.1	18	95	5	67	75	5	13	5	1.15
111773--111819	13	3.4	14	82	11	53	38	4	27	29	1.76
112218--112254	2	19.0	2	94	5	67	48	0	0	51	1.00
117803--117834	5	6.6	5	92	7	57	81	0	0	18	0.70

Tables:   1

The End!