genome.fa.s4667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004667.1 Hibiscus syriacus cultivar Beakdansim tig00010466_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157313

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5456--5651	70	2.8	70	82	0	239	31	11	25	31	1.91
6200--6279	25	3.4	22	77	13	70	42	5	0	52	1.23
6214--6348	25	5.0	27	73	13	89	41	2	1	54	1.21
6256--6345	30	3.1	30	68	20	73	44	1	2	52	1.20
6564--6638	3	25.3	3	87	12	111	30	1	1	66	1.08
7331--7455	44	2.8	44	80	4	119	33	19	20	26	1.96
7331--7515	43	4.3	44	80	4	180	35	19	21	24	1.96
10666--10905	45	5.3	45	88	4	317	36	8	22	32	1.85
11356--11397	20	2.0	21	90	4	68	23	30	21	23	1.99
13687--13742	16	3.2	17	78	12	53	80	0	14	5	0.88
16410--16450	22	1.9	22	90	5	66	39	4	12	43	1.63
16746--16985	45	5.3	45	90	2	349	37	7	23	30	1.83
17425--17466	20	2.0	21	95	4	77	23	33	21	21	1.97
24989--25113	41	3.0	40	74	11	110	36	13	17	32	1.89
27861--28080	42	5.3	41	70	14	139	33	20	17	28	1.95
30166--30212	24	2.0	24	100	0	94	34	4	8	53	1.51
41706--41761	22	2.5	22	97	0	103	26	14	19	39	1.90
46989--47022	16	2.1	17	88	5	52	20	8	5	64	1.43
59447--59507	22	2.9	19	77	17	59	45	1	0	52	1.10
65405--65449	17	2.6	17	75	0	54	42	0	0	57	0.98
65485--65532	2	24.5	2	95	4	89	50	0	0	50	1.00
67810--67879	22	3.3	21	70	16	63	50	2	4	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67685--67848	90	1.9	87	90	3	265	40	9	6	44	1.61
71942--72224	128	2.2	128	83	1	343	34	17	22	25	1.96
71942--72257	43	7.4	42	79	3	301	34	17	21	26	1.95
71960--72233	85	3.2	84	83	4	352	34	17	22	25	1.95
74905--75104	80	2.5	83	80	9	218	31	18	17	34	1.93
76656--76848	84	2.3	84	88	0	287	38	4	22	34	1.75
81469--81506	9	4.2	9	83	10	51	28	2	0	68	1.03
83322--83367	19	2.4	19	96	0	83	10	8	10	69	1.37
86746--87633	167	5.3	166	84	2	1043	29	25	19	25	1.98
86720--87635	416	2.2	415	86	2	1302	29	25	19	25	1.99
86746--87633	332	2.7	328	80	4	1027	29	25	19	25	1.98
88235--88599	39	9.7	37	72	15	218	46	3	6	43	1.47
88255--88480	115	2.0	113	81	8	269	48	3	6	42	1.45
88426--88508	32	2.5	32	80	7	94	48	9	6	36	1.61
88519--88548	15	1.9	16	93	6	53	33	0	10	56	1.32
88511--88555	16	2.7	16	82	6	54	42	0	6	51	1.28
88583--88620	2	19.5	2	94	5	69	50	0	0	50	1.00
90158--90228	21	3.5	21	79	9	60	25	4	1	69	1.15
90150--90228	13	5.9	13	72	11	54	25	3	1	69	1.12
91308--91339	16	2.0	16	100	0	64	18	25	31	25	1.98
91797--91850	3	18.3	3	82	17	69	29	0	0	70	0.88
91797--91850	16	3.4	16	83	16	69	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91800--91850	19	2.8	19	94	5	88	29	0	0	70	0.87
92226--92284	14	4.0	14	75	18	57	20	6	1	71	1.18
93782--93825	16	2.8	16	92	0	79	56	22	11	9	1.62
93768--93798	10	3.1	10	100	0	62	61	19	9	9	1.54
95651--95798	75	2.0	76	89	1	226	46	6	14	33	1.69
98237--98275	20	1.9	21	89	5	62	15	15	2	66	1.36
105602--105645	22	2.0	23	86	8	65	38	6	0	54	1.27
106354--106449	24	4.0	24	83	2	122	23	18	20	36	1.95
114607--114644	2	19.0	2	100	0	76	50	0	0	50	1.00
114727--114858	65	2.0	66	95	1	239	32	9	1	56	1.40
130371--130483	3	37.7	3	94	0	199	33	2	0	63	1.08
130479--130514	11	3.2	11	92	4	54	61	2	0	36	1.11
131820--131861	18	2.3	19	83	4	50	23	2	4	69	1.20
143120--143184	8	8.1	8	82	17	82	84	0	15	0	0.62
143120--143184	17	4.1	15	85	14	94	84	0	15	0	0.62
143497--143541	16	2.8	16	83	10	56	28	8	6	55	1.56
144322--144669	83	4.2	83	96	0	626	26	14	23	36	1.93
145481--145904	113	3.7	113	90	1	591	38	12	19	29	1.89
145465--145904	227	1.9	225	89	1	684	37	12	20	29	1.89
146221--146313	3	31.7	3	88	4	136	34	4	0	61	1.16
146220--146313	32	2.9	32	93	0	152	35	4	0	60	1.16
146758--146819	23	2.6	24	78	14	67	67	11	20	0	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148577--148741	82	2.0	82	97	0	312	43	14	8	33	1.76
153093--153162	24	3.0	23	82	12	81	24	25	17	32	1.96

Tables:   1

The End!