genome.fa.s4668.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004668.1 Hibiscus syriacus cultivar Beakdansim tig00010470_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81290

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6669--6731	30	2.1	29	82	8	74	28	11	22	38	1.88
12053--12214	59	2.7	61	74	9	154	44	4	17	32	1.71
17281--17367	33	2.6	34	85	3	131	35	24	14	25	1.94
19611--19715	37	2.8	37	86	0	147	40	16	15	28	1.88
20124--20166	2	21.5	2	100	0	86	48	0	0	51	1.00
24605--24637	14	2.4	14	94	0	57	42	18	6	33	1.75
24948--25014	8	7.8	8	82	12	80	82	2	13	1	0.86
24948--25014	18	3.9	16	81	16	80	82	2	13	1	0.86
24948--25036	26	3.3	27	78	12	94	80	4	12	2	0.94
25642--25696	22	2.5	22	96	0	101	36	27	14	21	1.93
26521--27364	106	8.0	106	87	3	1181	33	24	18	22	1.97
26521--27365	317	2.7	314	89	3	1252	33	24	18	22	1.97
28037--28141	37	2.8	37	88	0	156	40	15	15	29	1.88
28603--28681	35	2.3	34	80	6	88	21	8	1	68	1.24
31662--31751	33	2.7	34	87	6	130	36	22	15	25	1.93
37327--37370	18	2.4	18	84	0	52	56	2	13	27	1.49
41732--41821	38	2.2	42	75	11	98	48	4	8	37	1.55
41734--41825	40	2.4	38	85	3	121	47	4	8	39	1.54
41882--41918	2	18.5	2	100	0	74	51	0	0	48	1.00
42007--42056	14	3.2	15	83	16	66	48	6	6	40	1.52
42056--42102	17	2.8	17	75	12	60	40	0	6	53	1.27
43634--43886	30	8.4	30	95	0	452	32	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44086--45677	4	400.2	4	98	1	3121	49	25	0	25	1.50
46505--46581	20	3.7	20	79	14	75	24	23	23	28	1.99
46550--46710	64	2.5	62	79	5	169	24	23	19	32	1.98
52394--52427	16	2.1	16	89	10	52	50	14	0	35	1.44
53628--53692	30	2.2	30	88	0	94	30	10	1	56	1.42
53683--53786	31	3.3	29	76	15	93	36	5	2	54	1.39
53653--53786	61	2.2	62	81	8	148	35	6	2	55	1.42
53653--53786	30	4.3	32	76	13	111	35	6	2	55	1.42
53767--53795	15	1.9	15	100	0	58	51	0	0	48	1.00
57122--57152	15	2.0	16	93	6	55	64	9	0	25	1.24
61562--61611	3	16.7	3	91	8	84	34	0	2	64	1.05
67338--67400	12	5.2	12	72	14	58	26	12	22	38	1.90
67323--67437	24	4.8	24	89	4	169	25	14	20	40	1.90
67652--67676	2	12.5	2	100	0	50	48	0	0	52	1.00
69536--69589	21	2.6	21	93	0	90	18	18	20	42	1.89
69613--69653	19	2.2	19	86	0	55	24	31	21	21	1.98
72020--72058	12	3.2	12	79	13	53	28	12	23	35	1.91
72005--72119	24	4.8	24	87	4	169	26	13	19	40	1.89
76598--76704	42	2.6	41	85	4	135	28	19	23	28	1.98
76886--76985	42	2.4	42	88	5	141	31	22	22	25	1.98
76903--76979	20	3.8	20	69	16	59	31	22	23	23	1.99
76577--77409	275	3.0	272	86	3	1114	34	19	16	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77295--77465	55	3.1	54	79	13	172	42	17	8	31	1.79
77295--77508	58	3.8	56	77	11	181	41	18	7	32	1.79
77296--77498	110	1.8	110	82	6	259	41	18	8	31	1.80
79443--79522	4	20.2	4	73	16	69	0	20	0	80	0.72
79442--79522	13	5.7	15	78	17	84	0	19	0	80	0.72
79442--79529	35	2.5	36	87	5	117	0	19	0	80	0.71
79442--79529	29	3.1	27	75	12	88	0	19	0	80	0.71
79442--79529	15	6.1	15	79	12	80	0	19	0	80	0.71
79442--79539	36	2.8	35	83	7	101	2	17	1	79	0.88

Tables:   1

The End!