genome.fa.s4669.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004669.1 Hibiscus syriacus cultivar Beakdansim tig00010471_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114184

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
820--867	16	3.1	16	96	3	89	56	25	12	6	1.59
931--974	15	3.1	15	78	18	58	56	22	13	6	1.61
1698--1773	14	6.0	13	75	22	65	53	23	11	10	1.68
1698--1772	24	3.1	24	94	0	123	54	24	10	10	1.66
1708--1752	10	4.1	10	79	20	54	57	20	11	11	1.63
5897--5936	12	3.3	12	82	0	53	42	0	12	45	1.42
5965--5999	2	17.5	2	100	0	70	48	0	0	51	1.00
6444--6493	23	2.1	24	82	17	61	44	0	2	54	1.11
6577--6621	18	2.5	18	82	10	56	51	0	2	46	1.13
25786--25828	20	2.1	20	83	12	52	30	13	16	39	1.87
29647--29688	18	2.3	18	100	0	84	33	23	14	28	1.94
29641--29688	18	2.5	20	80	16	64	31	25	12	31	1.92
40353--40435	2	41.5	2	100	0	166	50	0	0	49	1.00
40602--40686	24	3.6	23	79	3	80	43	17	9	29	1.80
40620--40703	24	3.5	24	83	3	80	40	17	13	28	1.87
40602--40694	48	1.9	48	82	4	116	41	19	9	29	1.83
40609--40714	48	2.2	47	80	6	115	42	18	10	28	1.83
42221--42262	13	3.2	13	80	10	50	21	16	42	19	1.89
44240--44335	35	2.7	35	96	0	174	32	28	30	9	1.88
44413--44525	24	4.7	24	83	4	122	44	18	11	25	1.83
44413--44525	48	2.4	48	86	5	149	44	18	11	25	1.83
44413--44544	48	2.8	48	84	7	128	46	17	11	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45174--45200	12	2.2	12	100	0	54	33	14	7	44	1.73
46982--47024	18	2.4	18	92	0	68	11	20	46	20	1.82
46967--46998	13	2.5	13	94	0	55	12	18	50	18	1.78
49135--49247	48	2.4	48	87	3	156	43	17	13	25	1.86
49135--49213	24	3.3	24	85	0	104	43	18	10	27	1.83
49152--49239	24	3.7	24	80	3	106	42	17	15	25	1.88
52811--52853	21	2.0	21	90	0	68	46	13	13	25	1.81
54369--54527	63	2.5	63	84	2	176	32	18	20	28	1.96
55924--56389	149	3.1	149	96	1	844	28	15	20	34	1.94
59567--59637	19	3.8	18	73	17	65	29	21	25	23	1.99
59552--59632	37	2.2	37	84	4	110	29	22	24	23	1.99
61035--61498	149	3.1	149	97	0	867	28	16	20	34	1.94
61466--61510	23	2.0	23	90	0	72	22	26	26	24	2.00
67403--67516	31	3.7	31	85	0	165	56	14	8	20	1.65
67401--67519	62	1.9	62	98	0	229	55	15	9	20	1.67
68752--68835	3	26.7	3	86	11	75	39	0	1	59	1.05
68783--68821	2	20.5	2	89	10	64	46	0	0	53	1.00
69238--69271	14	2.3	15	90	5	52	79	5	11	2	1.02
74246--74277	15	2.1	15	94	0	55	25	18	9	46	1.79
81591--81673	7	12.4	7	78	11	86	81	0	18	0	0.68
81985--82029	16	2.8	16	83	10	56	28	8	6	55	1.56
82809--83286	83	5.8	83	96	1	859	26	12	22	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83779--83883	52	2.0	52	98	0	201	37	13	16	33	1.87
84181--84959	113	6.8	112	85	3	945	37	14	18	28	1.90
85198--85266	3	23.7	3	80	11	81	37	0	1	60	1.06
85654--85701	14	3.4	14	80	11	53	79	6	12	2	1.01
85662--85700	17	2.4	17	82	4	53	82	5	12	0	0.83
98892--99451	182	3.1	182	87	2	804	44	12	15	27	1.83
99351--99522	71	2.4	71	95	0	301	43	10	16	30	1.81
100045--100095	19	2.7	19	87	0	75	47	0	15	37	1.46
102089--102127	18	2.2	18	90	0	60	56	0	38	5	1.22
103766--104112	175	2.0	176	95	0	633	44	11	12	30	1.78
104142--105234	199	5.5	199	87	5	1453	42	15	14	27	1.86
104142--105241	397	2.8	400	87	4	1498	42	15	14	27	1.86
105591--105648	15	3.7	15	83	6	71	22	50	1	25	1.59
108304--108963	199	3.3	199	92	1	1081	42	17	14	25	1.87
108968--109536	200	2.8	201	91	2	937	36	16	13	33	1.88
112342--112384	19	2.3	18	84	11	59	62	0	2	34	1.08
112351--112397	25	1.9	26	87	12	73	63	0	0	36	0.94
112545--112582	17	2.2	18	86	13	53	63	2	10	23	1.39
112581--112658	31	2.6	31	80	11	74	65	3	3	26	1.27
113103--113204	37	2.8	37	89	0	141	30	14	14	40	1.86

Tables:   1

The End!