genome.fa.s467.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000467.1 Hibiscus syriacus cultivar Beakdansim tig00000865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84295

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
842--1074	80	2.9	81	87	3	339	39	10	19	30	1.86
1021--1132	58	1.9	58	87	1	161	39	10	17	32	1.84
921--1212	139	2.1	138	88	3	426	38	9	19	32	1.84
1060--1623	80	7.2	81	85	6	755	36	11	20	31	1.88
1247--1623	81	4.7	81	88	2	548	35	12	21	30	1.90
4146--4305	65	2.5	63	85	6	205	30	23	18	26	1.98
10103--10183	24	3.5	24	70	20	75	22	24	23	29	1.99
12751--12960	65	3.2	64	79	9	230	31	24	17	25	1.97
16400--16438	18	2.1	19	85	4	53	20	15	28	35	1.93
16936--17335	81	4.9	81	86	2	543	36	11	18	33	1.86
16936--17580	162	4.1	162	82	8	815	36	11	19	33	1.87
17199--17481	146	1.9	146	91	0	467	35	10	19	34	1.86
17337--17580	81	3.0	81	91	0	371	35	11	21	31	1.89
17539--17580	22	2.0	22	85	4	59	42	7	19	30	1.78
20495--20688	37	5.3	37	84	3	232	40	18	19	22	1.92
20736--21054	112	2.9	110	78	6	297	31	19	22	25	1.98
20735--21117	55	6.9	55	80	3	363	30	19	23	25	1.98
22185--22217	2	16.5	2	100	0	66	48	0	0	51	1.00
24087--24131	19	2.3	19	84	7	54	31	6	0	62	1.21
24641--24695	25	2.2	24	87	6	83	38	18	9	34	1.82
29940--30507	291	2.0	291	98	0	1109	23	25	19	31	1.98
32406--32460	28	2.0	28	92	0	92	30	18	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36259--36465	57	3.7	57	77	7	208	31	11	15	42	1.82
36221--36792	54	10.4	54	76	8	483	30	10	17	41	1.83
36214--36792	111	5.3	110	79	10	519	30	10	17	41	1.83
40057--40309	126	2.0	126	100	0	506	22	16	13	47	1.82
41217--41316	53	1.9	52	85	2	137	30	21	16	33	1.94
41751--41778	11	2.5	11	100	0	56	78	0	7	14	0.95
45343--45385	19	2.3	19	80	4	52	53	0	4	41	1.21
48116--48172	18	3.2	18	78	14	55	68	0	29	1	1.00
48115--48167	22	2.6	20	85	14	65	71	0	26	1	0.96
48146--48186	19	2.2	18	86	4	55	65	2	29	2	1.18
51726--52025	140	2.1	141	82	4	365	34	16	21	28	1.94
51907--52126	100	2.2	99	85	5	291	33	16	18	32	1.93
51768--52242	240	2.0	240	85	4	645	33	17	19	29	1.95
52008--52408	139	2.9	139	80	3	455	34	17	20	27	1.95
52557--52597	21	2.0	21	85	0	55	51	34	7	7	1.58
57596--58002	59	7.0	59	85	5	479	30	21	14	33	1.93
58320--58362	17	2.4	19	84	11	63	34	32	6	25	1.83
58324--58373	17	2.6	18	81	18	57	34	28	12	26	1.92
60565--60656	34	2.7	35	81	3	105	38	10	13	38	1.79
60565--60664	17	5.7	18	75	12	75	39	11	13	37	1.79
61601--61633	16	2.1	16	88	5	50	66	6	0	27	1.15
65671--65705	17	2.1	17	100	0	70	20	28	11	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66752--66835	44	2.0	41	81	6	96	21	4	3	70	1.22
68355--68467	55	2.1	55	96	0	208	21	19	15	44	1.87
73069--73144	34	2.2	34	79	9	84	11	15	22	50	1.77
73092--73164	24	3.0	24	95	0	137	9	13	23	53	1.69
73103--73157	14	4.2	14	75	17	64	9	12	23	54	1.66
73099--73177	24	3.3	23	91	3	113	12	11	18	56	1.65
73287--73322	14	2.5	15	90	4	56	50	33	0	16	1.46
74111--74200	45	2.0	46	88	2	137	30	16	24	28	1.97
80767--80806	21	1.9	21	85	10	55	35	10	2	52	1.48
82780--82832	26	2.0	26	85	0	70	32	15	22	30	1.94
83118--83193	14	5.6	14	71	4	66	46	32	0	21	1.52
83120--83158	21	1.9	20	89	5	60	48	30	0	20	1.50
83141--83197	27	2.1	28	80	9	64	47	31	0	21	1.51

Tables:   1

The End!