genome.fa.s4672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004672.1 Hibiscus syriacus cultivar Beakdansim tig00010475_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62225

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2189--2280	33	2.8	33	93	0	157	28	23	13	34	1.92
2331--2423	44	2.1	45	94	4	163	34	17	6	41	1.75
5169--5207	18	2.1	19	95	4	71	76	5	12	5	1.11
7074--7120	13	3.4	14	82	11	53	38	4	27	29	1.76
7519--7560	2	22.0	2	90	9	70	50	0	0	50	1.00
9573--9609	14	2.6	14	100	0	74	21	8	16	54	1.68
11649--11680	2	17.0	2	87	12	50	50	0	0	50	1.00
13049--13107	28	2.1	28	81	6	66	72	5	8	13	1.24
13165--13196	5	6.6	5	92	7	57	81	0	0	18	0.70
13779--14431	5	133.0	5	92	7	1094	59	0	0	40	0.98
14599--14661	23	2.7	23	92	5	99	39	9	4	46	1.58
14622--14781	39	4.0	39	76	13	166	39	9	4	46	1.56
14617--14775	78	2.0	80	90	3	250	39	8	5	46	1.57
14695--14799	23	4.6	23	72	18	94	37	9	4	48	1.57
14740--14800	25	2.4	27	78	15	76	40	8	3	47	1.49
17940--17979	18	2.2	18	86	0	53	15	2	42	40	1.60
18454--18478	13	1.9	13	100	0	50	40	0	8	52	1.31
18472--18508	3	12.3	3	94	0	65	62	0	2	35	1.10
18699--18775	40	1.9	40	86	5	111	19	18	33	28	1.95
19005--19349	66	5.2	66	83	6	405	39	13	20	26	1.89
19005--19332	132	2.5	132	88	2	471	39	13	20	25	1.89
19303--19359	30	1.9	30	88	0	87	38	14	15	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19799--19862	32	2.0	32	96	0	119	31	28	14	26	1.95
20902--20944	12	3.3	12	79	17	50	2	20	6	69	1.23
26577--26601	13	1.9	13	100	0	50	40	0	8	52	1.31
26595--26634	3	13.3	3	100	0	80	65	0	0	35	0.93
27647--27717	30	2.4	30	90	9	110	70	0	4	25	1.05
27643--27701	7	8.1	7	78	14	66	69	0	3	27	1.04
29419--29450	16	2.0	16	100	0	64	43	6	0	50	1.27
41545--41621	15	5.1	15	100	0	154	19	33	25	20	1.96
42786--42822	13	2.8	13	95	0	65	51	5	16	27	1.66
46966--47444	68	6.9	69	82	8	596	38	14	16	30	1.89
47028--47434	37	11.5	37	62	17	141	38	15	16	29	1.90
47167--47264	36	2.7	36	79	6	108	38	16	15	29	1.89
46966--47444	139	3.4	138	87	7	648	38	14	16	30	1.89
46966--47467	212	2.4	209	84	7	635	38	14	16	30	1.89
47448--47630	99	1.8	101	85	4	264	36	8	16	38	1.78
47600--47727	37	3.6	37	65	18	92	35	10	15	37	1.83
52534--52558	4	6.2	4	100	0	50	76	0	0	24	0.80
55202--55308	33	3.1	33	80	14	110	50	0	1	46	1.18
55264--55342	41	1.9	41	87	5	115	44	3	1	50	1.28
55202--55372	2	88.5	2	71	19	114	47	2	2	47	1.27
55202--55443	20	12.2	20	71	16	128	47	3	2	46	1.32
55199--55452	11	23.6	11	70	17	81	48	3	2	46	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55542--55606	3	21.7	3	78	12	71	29	1	1	67	1.09

Tables:   1

The End!