Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004673.1 Hibiscus syriacus cultivar Beakdansim tig00010477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60723

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12009--12125
5
23.4
5
72
8
71
75
7
1
15
1.11
12039--12066
6
4.7
6
100
0
56
85
0
0
14
0.59
12039--12078
13
3.2
13
89
3
55
82
5
0
12
0.82
12019--12082
18
3.8
17
80
13
62
78
4
1
15
1.00
12346--12376
14
2.1
15
94
5
55
77
0
0
22
0.77
14296--15450
85
13.7
85
86
2
1465
25
18
20
34
1.96
14296--15450
337
3.4
336
86
2
1539
25
18
20
34
1.96
16703--16929
95
2.6
86
80
12
278
29
19
19
31
1.96
16752--16938
95
2.0
95
91
0
302
28
18
17
34
1.94
21359--21389
4
7.8
4
100
0
62
74
0
0
25
0.82
22028--22062
2
17.5
2
100
0
70
51
0
0
48
1.00
22222--22290
31
2.3
30
80
11
79
76
1
14
7
1.06
22245--22297
21
2.5
21
78
9
63
75
0
13
11
1.05
22467--22503
3
12.7
3
83
16
51
72
0
0
27
0.84
22508--22666
6
26.5
6
100
0
318
33
32
16
16
1.92
24699--24755
30
1.9
30
92
0
96
24
3
8
63
1.39
24699--24764
30
2.3
29
87
7
82
22
3
7
66
1.31
24833--24888
15
3.7
15
80
7
51
50
1
0
48
1.11
24833--24927
48
2.0
48
81
4
113
44
3
0
52
1.17
24749--25010
136
2.0
131
80
10
289
40
6
1
51
1.37
24885--24980
29
3.3
29
83
11
126
38
6
1
54
1.33
24970--25010
14
2.8
15
88
3
57
46
2
2
48
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25052--25119
28
2.3
29
82
7
84
55
0
10
33
1.34
28870--28922
2
26.5
2
100
0
106
50
0
0
49
1.00
29162--29188
4
6.8
4
100
0
54
74
0
0
25
0.83
29826--29870
2
22.5
2
100
0
90
51
0
0
48
1.00
29923--30007
21
4.0
21
74
18
59
76
4
5
12
1.13
30264--30289
3
8.7
3
100
0
52
69
0
0
30
0.89
30300--30806
6
84.5
6
96
3
950
50
16
0
33
1.46
32822--32878
30
1.9
30
92
0
96
24
3
8
63
1.39
32955--33010
15
3.7
15
80
7
51
50
1
0
48
1.11
32955--33049
48
2.0
48
81
4
113
44
3
0
52
1.17
33007--33102
29
3.3
29
83
11
126
38
6
1
54
1.33
33092--33132
14
2.8
15
88
3
57
46
2
2
48
1.28
33172--33239
28
2.3
29
82
7
84
55
0
10
33
1.34
39716--39759
19
2.2
20
88
11
65
13
22
38
25
1.91
47283--47313
16
1.9
16
93
0
53
29
0
3
67
1.06
47260--47314
25
2.2
24
81
12
67
34
0
1
63
1.05
51409--51596
41
4.7
41
77
6
143
39
19
7
33
1.80
51473--51589
36
3.1
36
79
6
108
41
17
8
32
1.79
51473--51619
77
1.9
77
85
0
204
40
17
10
32
1.83
51788--51880
41
2.3
41
84
0
114
39
19
8
32
1.82
59745--59974
123
1.9
121
84
6
311
37
23
10
28
1.88
59745--59974
41
5.7
40
81
10
252
37
23
10
28
1.88

Tables:   1

The End!