genome.fa.s4675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004675.1 Hibiscus syriacus cultivar Beakdansim tig00010480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61647

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12--69	20	2.9	20	89	0	89	27	31	13	27	1.94
10--231	94	2.4	93	84	4	288	31	27	14	27	1.95
4148--4186	18	2.2	18	100	0	78	15	48	12	23	1.79
5933--6209	45	6.2	46	82	5	273	29	20	9	40	1.84
5933--6209	90	3.1	89	81	4	306	29	20	9	40	1.84
5944--6205	135	1.9	134	81	5	314	30	20	9	39	1.84
6703--6784	22	3.9	21	79	7	94	26	30	10	31	1.91
12302--12383	21	3.8	21	79	9	76	29	24	20	25	1.99
18150--18188	20	2.0	20	84	0	51	30	12	23	33	1.92
22780--22921	43	3.4	42	78	9	155	33	28	16	21	1.95
22817--23276	139	3.3	139	87	1	661	30	29	18	21	1.97
24936--25017	16	5.2	16	75	5	78	34	28	6	31	1.82
24928--25044	46	2.5	46	87	0	162	32	28	6	32	1.83
24936--25043	16	7.0	16	71	8	71	32	27	6	33	1.82
25237--25272	14	2.6	14	90	0	54	22	13	5	58	1.56
26273--26319	18	2.6	19	90	10	80	38	0	4	57	1.18
34176--34218	16	2.6	16	81	3	50	48	27	4	18	1.68
38164--38238	37	2.0	37	100	0	150	54	0	2	42	1.14
38182--38244	18	3.4	18	69	26	60	55	0	3	41	1.16
41287--41347	28	2.2	28	85	5	79	67	9	1	21	1.29
41286--41347	29	2.2	28	83	11	81	67	9	1	20	1.28
48478--48522	23	2.0	23	91	4	74	53	11	17	17	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48843--48867	2	12.5	2	100	0	50	48	0	0	52	1.00
48952--49015	29	2.1	31	85	5	87	29	12	21	35	1.91
52569--52614	23	2.0	23	86	4	65	23	6	8	60	1.49
53375--53417	20	2.2	20	86	0	59	46	6	4	41	1.51
54422--54583	60	2.7	60	74	9	159	43	4	18	32	1.71
59644--59733	33	2.7	34	85	3	137	36	23	15	24	1.94

Tables:   1

The End!