genome.fa.s4676.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004676.1 Hibiscus syriacus cultivar Beakdansim tig00010483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69816

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542--588	25	1.9	24	86	4	67	31	0	2	65	1.04
4673--4836	40	4.2	41	73	9	126	39	18	9	32	1.83
4996--5087	41	2.3	40	82	1	103	39	19	8	32	1.82
12838--13066	41	5.6	41	81	9	243	37	23	10	28	1.88
12836--13066	123	1.9	122	84	5	313	37	22	10	29	1.88
21536--21586	20	2.6	19	75	9	57	66	0	27	5	1.14
22687--22731	22	2.0	22	100	0	90	55	17	4	22	1.60
24664--24702	20	2.0	20	94	0	69	33	7	15	43	1.75
26576--26652	37	2.1	37	85	4	102	48	1	3	46	1.28
31738--31847	56	2.0	55	90	1	175	47	15	10	27	1.77
34057--34104	18	2.7	18	96	0	87	29	16	25	29	1.97
37283--37328	11	4.1	11	81	13	58	28	26	19	26	1.99
37653--37777	45	2.8	45	81	4	144	29	21	9	39	1.85
37882--37963	40	2.0	40	97	0	155	32	25	17	24	1.96
41568--41607	21	2.0	20	95	5	71	47	12	15	25	1.80
42056--42088	16	2.1	16	100	0	66	57	24	12	6	1.57
42154--42228	10	7.7	10	69	21	61	57	21	12	9	1.62
42158--42222	16	4.1	16	95	0	121	56	23	12	7	1.61
42970--43030	24	2.5	24	91	0	95	55	24	9	9	1.63
42976--43031	14	4.3	14	78	17	66	53	25	12	8	1.67
43608--43695	39	2.2	40	84	6	117	42	9	3	45	1.52
43978--44020	22	2.0	22	95	0	77	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49967--50068	28	3.5	28	75	13	80	41	9	9	39	1.71
58070--58123	20	2.7	19	75	8	63	33	31	18	16	1.93
58110--58222	20	5.5	20	71	13	77	34	22	19	23	1.96
58173--58465	20	14.5	20	80	5	243	37	23	19	19	1.94
58214--58465	40	6.2	40	87	2	301	37	23	19	19	1.94
58496--58544	19	2.7	17	81	9	53	28	24	14	32	1.94
59775--59878	51	2.0	51	83	5	127	31	17	5	45	1.72
62513--62566	24	2.2	24	93	0	90	20	18	20	40	1.91
65092--65204	19	6.4	19	72	20	111	44	19	22	14	1.86
65059--65152	33	2.8	34	81	3	109	40	22	22	14	1.90
65107--65134	14	2.0	14	100	0	56	42	21	21	14	1.88
65108--65141	14	2.4	14	90	0	50	44	20	23	11	1.84
65092--65204	53	2.2	52	88	1	172	44	19	22	14	1.86
65146--65239	33	2.8	33	95	0	161	45	19	22	12	1.83
65402--65438	14	2.6	14	91	0	65	45	21	0	32	1.52
68871--68952	20	4.2	20	81	9	105	46	18	23	12	1.82
68869--68945	40	1.9	39	89	2	118	45	19	23	11	1.83
68869--68981	19	6.1	19	79	13	119	45	18	23	12	1.84
68977--69021	19	2.4	19	92	0	72	8	17	26	46	1.78
69048--69085	20	1.9	20	88	0	58	13	15	21	50	1.78
69542--69713	20	8.6	20	81	3	211	19	19	25	36	1.95
69544--69771	40	5.8	40	85	6	277	19	18	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69722--69771	20	2.6	19	87	12	75	14	18	26	42	1.87

Tables:   1

The End!