genome.fa.s4677.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004677.1 Hibiscus syriacus cultivar Beakdansim tig00010487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55244

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5513--5559	24	2.0	24	91	8	78	21	42	6	29	1.77
11269--11332	27	2.3	27	94	2	110	39	4	18	37	1.72
12102--12171	30	2.3	30	92	0	113	32	25	31	10	1.89
13011--13056	24	1.9	24	90	0	74	32	34	2	30	1.70
15768--15817	24	2.1	24	96	0	91	30	40	2	28	1.68
23246--23287	12	3.6	12	78	15	52	83	4	11	0	0.79
23219--23307	23	3.5	24	78	12	81	79	5	10	4	1.03
23256--23304	20	2.5	20	80	9	55	83	4	8	4	0.89
25060--25848	4	198.2	4	96	1	1442	48	24	1	24	1.58
26016--26321	54	5.7	54	78	9	270	33	9	15	40	1.80
26063--26323	53	4.9	53	77	11	241	33	9	17	39	1.82
26046--26325	105	2.6	108	80	8	322	32	9	17	40	1.82
26378--26490	42	2.7	41	79	6	138	25	22	22	30	1.99
27553--27922	139	2.7	139	96	0	668	34	17	21	25	1.96
28697--28747	21	2.4	21	100	0	102	45	0	43	11	1.40
34623--35046	192	2.2	193	82	3	514	36	17	24	21	1.94
34809--35340	246	2.2	246	93	0	902	35	19	23	21	1.96
39009--39044	18	2.0	18	94	0	63	63	0	0	36	0.94
40789--40816	3	9.3	3	100	0	56	0	35	0	64	0.94
42319--42385	22	3.0	23	87	10	95	20	26	23	28	1.99
44535--44925	54	7.2	54	87	3	518	28	18	19	32	1.96
44544--44972	162	2.6	162	85	1	466	29	17	19	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45042--45075	2	17.0	2	100	0	68	50	0	0	50	1.00
49798--49866	30	2.3	30	82	0	84	18	27	24	28	1.98
52095--52157	29	2.4	25	76	20	74	42	1	3	52	1.27

Tables:   1

The End!