genome.fa.s4678.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004678.1 Hibiscus syriacus cultivar Beakdansim tig00010489_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94525

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3952--4000	21	2.3	21	100	0	98	26	28	24	20	1.99
4064--4161	45	2.2	45	100	0	196	32	17	21	28	1.96
4102--4270	65	2.6	65	84	8	202	29	17	22	30	1.96
4589--4722	2	67.5	2	98	1	261	50	0	0	50	1.00
6044--6371	164	2.0	164	100	0	656	35	17	10	35	1.84
7729--7797	30	2.3	30	97	0	129	52	10	2	34	1.50
13059--13181	32	3.9	32	80	10	119	31	5	8	53	1.55
13526--13635	41	2.7	40	90	4	175	18	20	25	36	1.94
13551--13623	20	3.6	20	75	3	83	10	21	27	39	1.87
13530--13635	20	5.2	21	68	7	67	17	19	26	35	1.95
13668--13809	20	6.9	21	73	7	139	16	21	24	37	1.94
13497--13774	142	2.0	142	93	2	479	19	22	23	34	1.97
13668--13850	82	2.2	83	93	3	309	17	20	24	37	1.94
13798--13869	22	3.4	22	73	11	87	18	19	25	37	1.94
13819--13884	19	3.3	19	72	12	69	18	19	21	40	1.91
13668--13892	123	1.8	121	84	9	303	17	20	23	38	1.93
13668--13875	41	5.1	40	88	8	244	17	21	23	37	1.93
13675--13875	82	2.5	80	89	7	273	17	20	23	37	1.94
13968--14023	6	9.7	6	98	1	98	30	51	17	0	1.46
14528--14584	6	10.4	5	94	1	60	1	17	52	28	1.54
14528--14579	15	3.2	16	89	8	61	1	17	53	26	1.54
14536--14584	6	8.7	6	97	2	77	0	18	53	28	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14668--14733	19	3.3	19	72	12	69	42	21	18	18	1.89
14683--14754	22	3.4	22	73	11	78	38	25	18	18	1.92
14746--14914	61	2.8	61	87	3	180	39	23	21	15	1.91
14677--14859	41	4.4	41	88	5	246	39	23	20	15	1.91
14746--14943	102	2.0	100	91	4	326	38	23	21	16	1.93
14848--14943	39	2.4	41	96	3	178	36	23	20	18	1.95
16030--16068	13	3.3	13	83	16	50	28	5	0	66	1.12
15961--16705	281	2.6	280	80	5	804	31	13	5	48	1.66
18178--18297	35	3.3	36	88	5	172	44	20	5	30	1.72
18229--18289	21	3.2	21	65	29	64	42	21	4	31	1.74
18180--18324	35	4.1	36	82	11	133	42	19	6	32	1.76
22794--22940	35	4.2	35	83	9	167	41	20	6	31	1.77
29743--29776	16	2.1	16	94	0	59	32	26	8	32	1.87
30205--30276	37	2.0	36	91	5	119	47	15	5	31	1.68
30210--30296	35	2.4	36	84	5	106	42	16	9	32	1.79
33712--33792	34	2.4	34	93	0	144	25	30	12	30	1.92
35742--35799	26	2.1	27	84	12	75	48	17	15	18	1.82
36842--36943	24	4.2	24	89	0	132	26	15	18	39	1.91
38201--38245	19	2.4	19	88	0	63	22	6	22	48	1.73
40956--41021	20	3.4	20	79	14	84	28	25	16	28	1.97
46739--46860	21	5.6	21	74	10	86	28	26	21	23	1.99
46739--46836	45	2.2	44	89	5	144	28	24	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46739--46842	21	4.7	23	73	13	92	27	25	21	25	1.99
51207--51308	24	4.2	24	83	0	123	28	13	19	38	1.90
51974--52017	23	1.9	23	95	0	79	36	13	9	40	1.76
57013--57115	32	3.2	32	84	4	120	23	18	18	39	1.92
62093--62172	41	2.0	41	92	0	133	42	16	16	25	1.88
62413--62465	20	2.7	20	96	0	97	49	15	5	30	1.67
67678--67725	22	2.2	22	84	0	60	66	18	0	14	1.25
69086--69163	31	2.5	32	79	8	97	28	29	26	15	1.96
80891--80928	20	1.9	20	88	0	58	23	26	13	36	1.91
80904--80945	22	1.9	22	85	0	57	21	28	11	38	1.89
88038--88105	31	2.3	29	87	5	91	36	8	22	32	1.85

Tables:   1

The End!